# HG changeset patch
# User iuc
# Date 1527099837 14400
# Node ID 2f097bbdd0b4c319824832a15f08dba9fd1aa4ba
# Parent  d050143006270823da2851c912456165f0b3cb8d
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 9c21a3564ebac92db23e2d827dabe6b05c56ad32

diff -r d05014300627 -r 2f097bbdd0b4 repeatmasker.xml
--- a/repeatmasker.xml	Fri May 04 07:59:35 2018 -0400
+++ b/repeatmasker.xml	Wed May 23 14:23:57 2018 -0400
@@ -66,7 +66,11 @@
         sed -r 's/^ *// ; s/ *$//; s/\+ //; s/ +/\t/g' rm_input.fasta.polyout >'${output_polymorphic}' &&
       #end if
     #end if
-    mv rm_input.fasta.cat '${output_repeat_catalog}'
+    if [ -f 'rm_input.fasta.cat.gz' ]; then
+      zcat 'rm_input.fasta.cat.gz' > '${output_repeat_catalog}';
+    else
+      mv rm_input.fasta.cat '${output_repeat_catalog}';
+    fi
     ]]>
   </command>