Mercurial > repos > bgruening > repeat_masker

diff test-data/small_dfam.fasta.cat @ 12:07acb3a096d7 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/repeatmasker commit 7a5f368a5859e659aa36d0358bb96ca12574e2cc
author iuc
date Mon, 24 Apr 2023 10:40:41 +0000
parents c348c911a415
children
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--- a/test-data/small_dfam.fasta.cat	Thu Oct 21 15:48:56 2021 +0000
+++ b/test-data/small_dfam.fasta.cat	Mon Apr 24 10:40:41 2023 +0000
@@ -82,6 +82,7 @@
 
 Matrix = 25p39g.matrix
 Kimura (with divCpGMod) = 29.45
+CpG sites = 10, Kimura (unadjusted) = 31.65
 Transitions / transversions = 1.43 (10/7)
 Gap_init rate = 0.07 (5 / 70), avg. gap size = 1.00 (5 / 5)
 
@@ -113,6 +114,6 @@
 ## Total Length: 14220
 ## Total NonMask ( excluding >20bp runs of N/X bases ): 14220
 ## Total NonSub ( excluding all non ACGT bases ):14220
-RepeatMasker version 4.1.2-p1 , default mode
-run with rmblastn version 2.10.0+
-RM Library: CONS-Dfam_3.3
+RepeatMasker version 4.1.5 , default mode
+run with rmblastn version 2.13.0+
+RM Library: CONS-Dfam_3.7