Mercurial > repos > bgruening > repeat_masker

annotate test-data/small.fasta.stats @ 12:07acb3a096d7 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/repeatmasker commit 7a5f368a5859e659aa36d0358bb96ca12574e2cc
author iuc
date Mon, 24 Apr 2023 10:40:41 +0000
parents c348c911a415
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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26c5f217aad7 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 8dacb4321122d92df0983e0794cf23572be03224
iuc
parents:
diff changeset
1 ==================================================
7
3db74a95869b "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 7f117678cfee55bb18706fd1bf14c0a380261eab"
iuc
parents: 2
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2 file name: rm_input.fasta
1
26c5f217aad7 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 8dacb4321122d92df0983e0794cf23572be03224
iuc
parents:
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3 sequences: 1
26c5f217aad7 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 8dacb4321122d92df0983e0794cf23572be03224
iuc
parents:
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4 total length: 14220 bp (14220 bp excl N/X-runs)
26c5f217aad7 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 8dacb4321122d92df0983e0794cf23572be03224
iuc
parents:
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5 GC level: 39.94 %
26c5f217aad7 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 8dacb4321122d92df0983e0794cf23572be03224
iuc
parents:
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6 bases masked: 378 bp ( 2.66 %)
26c5f217aad7 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 8dacb4321122d92df0983e0794cf23572be03224
iuc
parents:
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7 ==================================================
26c5f217aad7 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 8dacb4321122d92df0983e0794cf23572be03224
iuc
parents:
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8 number of length percentage
26c5f217aad7 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 8dacb4321122d92df0983e0794cf23572be03224
iuc
parents:
diff changeset
9 elements* occupied of sequence
26c5f217aad7 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 8dacb4321122d92df0983e0794cf23572be03224
iuc
parents:
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10 --------------------------------------------------
8
f99b5b869c94 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 69abffb867af7c4329eaa513201bd6626ac39cbf"
iuc
parents: 7
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11 Retroelements 0 0 bp 0.00 %
f99b5b869c94 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 69abffb867af7c4329eaa513201bd6626ac39cbf"
iuc
parents: 7
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12 SINEs: 0 0 bp 0.00 %
12
07acb3a096d7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/repeatmasker commit 7a5f368a5859e659aa36d0358bb96ca12574e2cc
iuc
parents: 9
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13 Penelope: 0 0 bp 0.00 %
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f99b5b869c94 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 69abffb867af7c4329eaa513201bd6626ac39cbf"
iuc
parents: 7
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14 LINEs: 0 0 bp 0.00 %
f99b5b869c94 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 69abffb867af7c4329eaa513201bd6626ac39cbf"
iuc
parents: 7
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15 CRE/SLACS 0 0 bp 0.00 %
f99b5b869c94 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 69abffb867af7c4329eaa513201bd6626ac39cbf"
iuc
parents: 7
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16 L2/CR1/Rex 0 0 bp 0.00 %
f99b5b869c94 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 69abffb867af7c4329eaa513201bd6626ac39cbf"
iuc
parents: 7
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17 R1/LOA/Jockey 0 0 bp 0.00 %
f99b5b869c94 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 69abffb867af7c4329eaa513201bd6626ac39cbf"
iuc
parents: 7
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18 R2/R4/NeSL 0 0 bp 0.00 %
f99b5b869c94 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 69abffb867af7c4329eaa513201bd6626ac39cbf"
iuc
parents: 7
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19 RTE/Bov-B 0 0 bp 0.00 %
f99b5b869c94 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 69abffb867af7c4329eaa513201bd6626ac39cbf"
iuc
parents: 7
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20 L1/CIN4 0 0 bp 0.00 %
f99b5b869c94 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 69abffb867af7c4329eaa513201bd6626ac39cbf"
iuc
parents: 7
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21 LTR elements: 0 0 bp 0.00 %
f99b5b869c94 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 69abffb867af7c4329eaa513201bd6626ac39cbf"
iuc
parents: 7
diff changeset
22 BEL/Pao 0 0 bp 0.00 %
f99b5b869c94 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 69abffb867af7c4329eaa513201bd6626ac39cbf"
iuc
parents: 7
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23 Ty1/Copia 0 0 bp 0.00 %
f99b5b869c94 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 69abffb867af7c4329eaa513201bd6626ac39cbf"
iuc
parents: 7
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24 Gypsy/DIRS1 0 0 bp 0.00 %
f99b5b869c94 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 69abffb867af7c4329eaa513201bd6626ac39cbf"
iuc
parents: 7
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25 Retroviral 0 0 bp 0.00 %
1
26c5f217aad7 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 8dacb4321122d92df0983e0794cf23572be03224
iuc
parents:
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26
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f99b5b869c94 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 69abffb867af7c4329eaa513201bd6626ac39cbf"
iuc
parents: 7
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27 DNA transposons 0 0 bp 0.00 %
f99b5b869c94 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 69abffb867af7c4329eaa513201bd6626ac39cbf"
iuc
parents: 7
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28 hobo-Activator 0 0 bp 0.00 %
f99b5b869c94 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 69abffb867af7c4329eaa513201bd6626ac39cbf"
iuc
parents: 7
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29 Tc1-IS630-Pogo 0 0 bp 0.00 %
f99b5b869c94 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 69abffb867af7c4329eaa513201bd6626ac39cbf"
iuc
parents: 7
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30 En-Spm 0 0 bp 0.00 %
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07acb3a096d7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/repeatmasker commit 7a5f368a5859e659aa36d0358bb96ca12574e2cc
iuc
parents: 9
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31 MULE-MuDR 0 0 bp 0.00 %
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f99b5b869c94 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 69abffb867af7c4329eaa513201bd6626ac39cbf"
iuc
parents: 7
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32 PiggyBac 0 0 bp 0.00 %
f99b5b869c94 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 69abffb867af7c4329eaa513201bd6626ac39cbf"
iuc
parents: 7
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33 Tourist/Harbinger 0 0 bp 0.00 %
f99b5b869c94 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 69abffb867af7c4329eaa513201bd6626ac39cbf"
iuc
parents: 7
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34 Other (Mirage, 0 0 bp 0.00 %
f99b5b869c94 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 69abffb867af7c4329eaa513201bd6626ac39cbf"
iuc
parents: 7
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35 P-element, Transib)
1
26c5f217aad7 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 8dacb4321122d92df0983e0794cf23572be03224
iuc
parents:
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36
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f99b5b869c94 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 69abffb867af7c4329eaa513201bd6626ac39cbf"
iuc
parents: 7
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37 Rolling-circles 0 0 bp 0.00 %
1
26c5f217aad7 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 8dacb4321122d92df0983e0794cf23572be03224
iuc
parents:
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38
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f99b5b869c94 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 69abffb867af7c4329eaa513201bd6626ac39cbf"
iuc
parents: 7
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39 Unclassified: 0 0 bp 0.00 %
1
26c5f217aad7 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 8dacb4321122d92df0983e0794cf23572be03224
iuc
parents:
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40
8
f99b5b869c94 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 69abffb867af7c4329eaa513201bd6626ac39cbf"
iuc
parents: 7
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41 Total interspersed repeats: 0 bp 0.00 %
1
26c5f217aad7 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 8dacb4321122d92df0983e0794cf23572be03224
iuc
parents:
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42
26c5f217aad7 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 8dacb4321122d92df0983e0794cf23572be03224
iuc
parents:
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43
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f99b5b869c94 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 69abffb867af7c4329eaa513201bd6626ac39cbf"
iuc
parents: 7
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44 Small RNA: 0 0 bp 0.00 %
1
26c5f217aad7 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 8dacb4321122d92df0983e0794cf23572be03224
iuc
parents:
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45
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f99b5b869c94 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 69abffb867af7c4329eaa513201bd6626ac39cbf"
iuc
parents: 7
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46 Satellites: 0 0 bp 0.00 %
f99b5b869c94 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 69abffb867af7c4329eaa513201bd6626ac39cbf"
iuc
parents: 7
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47 Simple repeats: 8 378 bp 2.66 %
f99b5b869c94 "planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 69abffb867af7c4329eaa513201bd6626ac39cbf"
iuc
parents: 7
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48 Low complexity: 0 0 bp 0.00 %
1
26c5f217aad7 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 8dacb4321122d92df0983e0794cf23572be03224
iuc
parents:
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49 ==================================================
26c5f217aad7 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 8dacb4321122d92df0983e0794cf23572be03224
iuc
parents:
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50
26c5f217aad7 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 8dacb4321122d92df0983e0794cf23572be03224
iuc
parents:
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51 * most repeats fragmented by insertions or deletions
26c5f217aad7 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 8dacb4321122d92df0983e0794cf23572be03224
iuc
parents:
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52 have been counted as one element
2
d05014300627 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit cbba6947f1380751e1db3fa5b043af630523fd86
iuc
parents: 1
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53 Runs of >=20 X/Ns in query were excluded in % calcs
d05014300627 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit cbba6947f1380751e1db3fa5b043af630523fd86
iuc
parents: 1
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54
1
26c5f217aad7 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 8dacb4321122d92df0983e0794cf23572be03224
iuc
parents:
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55
12
07acb3a096d7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/repeatmasker commit 7a5f368a5859e659aa36d0358bb96ca12574e2cc
iuc
parents: 9
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56 RepeatMasker version 4.1.5 , default mode
07acb3a096d7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/repeatmasker commit 7a5f368a5859e659aa36d0358bb96ca12574e2cc
iuc
parents: 9
diff changeset
57
07acb3a096d7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/repeatmasker commit 7a5f368a5859e659aa36d0358bb96ca12574e2cc
iuc
parents: 9
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58 run with rmblastn version 2.13.0+
07acb3a096d7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/repeatmasker commit 7a5f368a5859e659aa36d0358bb96ca12574e2cc
iuc
parents: 9
diff changeset
59 The query was compared to unclassified sequences in ".../dataset_9e3ddbd2-0776-4c6d-bed6-0f4cd415796c.dat"
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c348c911a415 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/repeatmasker commit c4bf14b461856220df4b4bbdbb4b9bbad1ff8749"
iuc
parents: 8
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60 FamDB: