Mercurial > repos > bgruening > repeat_masker

annotate test-data/fake_repbase.embl @ 4:13b7842c72bc draft

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit 6cf009024dfff81b0e0f836b76cf475e7cf84c71
author iuc
date Tue, 18 Dec 2018 14:04:52 -0500
parents d05014300627
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
2
d05014300627 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit cbba6947f1380751e1db3fa5b043af630523fd86
iuc
parents:
diff changeset
1 CC Fake repbase-like embl file, using data from DfamConsensus.embl*
d05014300627 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit cbba6947f1380751e1db3fa5b043af630523fd86
iuc
parents:
diff changeset
2 CC ****************************************************************
d05014300627 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit cbba6947f1380751e1db3fa5b043af630523fd86
iuc
parents:
diff changeset
3 XX
d05014300627 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit cbba6947f1380751e1db3fa5b043af630523fd86
iuc
parents:
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4 ID ACROBAT1 repeatmasker; DNA; ???; 768 BP.
d05014300627 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit cbba6947f1380751e1db3fa5b043af630523fd86
iuc
parents:
diff changeset
5 CC consensus - See RepBase for additional annotations.
d05014300627 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit cbba6947f1380751e1db3fa5b043af630523fd86
iuc
parents:
diff changeset
6 XX
d05014300627 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit cbba6947f1380751e1db3fa5b043af630523fd86
iuc
parents:
diff changeset
7 SQ Sequence 768 BP; 178 A; 194 C; 215 G; 181 T; 0 other;
d05014300627 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit cbba6947f1380751e1db3fa5b043af630523fd86
iuc
parents:
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8 ggtgatgctg ccaacttact gatttagtgt atgatggtgt ttttgaggtg ctccagtggc 60
d05014300627 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit cbba6947f1380751e1db3fa5b043af630523fd86
iuc
parents:
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9 ttctgtttct atcagctgtc cctcctgttc agctactgac ggggtggtgc gtaacggcaa 120
d05014300627 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit cbba6947f1380751e1db3fa5b043af630523fd86
iuc
parents:
diff changeset
10 aagcaccgcc ggacatcagc gctatctctg ctctcactgc cgtaaaacat ggcaactgca 180
d05014300627 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit cbba6947f1380751e1db3fa5b043af630523fd86
iuc
parents:
diff changeset
11 gttcacttac accgcttctc aacccggtac gcaccagaaa atcattgata tggccatgaa 240
d05014300627 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit cbba6947f1380751e1db3fa5b043af630523fd86
iuc
parents:
diff changeset
12 tggcgttgga tgccgggcaa cagcccgcat tatgggcgtt ggcctcaaca cgattttacg 300
d05014300627 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit cbba6947f1380751e1db3fa5b043af630523fd86
iuc
parents:
diff changeset
13 tcacttaaaa aactcaggcc gcagtcggta acctcgcgca tacagccggg cagtgacgtc 360
d05014300627 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit cbba6947f1380751e1db3fa5b043af630523fd86
iuc
parents:
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14 atcgtctgcg cggaaatgga cgaacagtgg ggctatgtcg gggctaaatc gcgccagcgc 420
d05014300627 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit cbba6947f1380751e1db3fa5b043af630523fd86
iuc
parents:
diff changeset
15 tggctgtttt acgcgtatga cagtctccgg aagacggttg ttgcgcacgt attcggtgaa 480
d05014300627 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit cbba6947f1380751e1db3fa5b043af630523fd86
iuc
parents:
diff changeset
16 cgcactatgg cgacgctggg gcgtcttatg agcctgctgt caccctttga cgtggtgata 540
d05014300627 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit cbba6947f1380751e1db3fa5b043af630523fd86
iuc
parents:
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17 tggatgacgg atggctggcc gctgtatgaa tcccgcctga agggaaagct gcacgtaatc 600
d05014300627 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit cbba6947f1380751e1db3fa5b043af630523fd86
iuc
parents:
diff changeset
18 agcaagcgat atacgcagcg aattgagcgg cataacctga atctgaggca gcacctggca 660
d05014300627 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit cbba6947f1380751e1db3fa5b043af630523fd86
iuc
parents:
diff changeset
19 cggctgggac ggaagtcgct gtcgttctca aaatcggtgg agctgcatga caaagtcatc 720
d05014300627 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit cbba6947f1380751e1db3fa5b043af630523fd86
iuc
parents:
diff changeset
20 gggcattatc tgaacataaa acactatcaa taagttggag tcattacc 768
d05014300627 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/repeat_masker commit cbba6947f1380751e1db3fa5b043af630523fd86
iuc
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21 //