changeset 0:f034a9d33aca draft default tip

Uploaded

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/recurring_lines.xml	Thu May 15 11:50:30 2014 -0400
@@ -0,0 +1,61 @@
+<tool id="bg_text_file_with_recurring_lines" name="Create text file" version="0.1">
+    <description>with recurring lines</description>
+    <command>
+
+        #for $token in $token_set:
+            #if str($token.repeat_select.repeat_select_opts) == 'user':
+                times=#echo $token.repeat_select.times#;
+            #else:
+                times=`wc -l $token.repeat_select.infile | awk '{print $1}'`;
+            #end if
+
+            yes -- "${token.line}" 2>/dev/null | head -n \$times >> $outfile;
+        #end for
+
+    </command>
+    <inputs>
+
+        <repeat name="token_set" title=" selection" min="1">
+
+            <param name="line" type="text" size="30" label="Characters to insert" help="Specify the characters that will be inserted X times in every line"/>
+
+            <conditional name="repeat_select">
+                <param name="repeat_select_opts" type="select" label="Specify the number of iterations by">
+                    <option value="file">File (for each line in file)</option>
+                    <option value="user" selected="True">User defined number</option>
+                </param>
+                <when value="user">
+                    <param name="times" size="10" type="integer" value="10" min="1" label="How many times?"/>
+                </when>
+                <when value="file">
+                    <param name="infile" type="data" format="txt" label="Template file" 
+                        help="For every line, the specified characters will be written once. That means X is the line-number from the given file."/>
+                </when>
+            </conditional>
+        </repeat>
+
+    </inputs>
+    <outputs>
+        <data format="txt" name="outfile" from_work_dir="prediction" label="Generated text file"/>
+    </outputs>
+    <tests>
+        <test>
+        </test>
+    </tests>
+    <help>
+
+.. class:: infomark
+
+**What it does** 
+
+This tool creates a text file with recurring lines. You can specify a bunch of characters or entire sentences. 
+The entire string will be printed X times separated by a line break. X can be either given by the use as a number or calculated by a given file.
+In case the user provides a file, the line number will be used as X.
+
+
+**References**
+
+Bjoern A. Gruening: https://github.com/bgruening/galaxytools/
+
+    </help>
+</tool>