Mercurial > repos > bgruening > prinseq

diff tool-data/example1_trim_right_10.fastq @ 0:9790cfb46d03 draft default tip

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author bgruening
date Mon, 07 Oct 2013 15:34:32 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool-data/example1_trim_right_10.fastq	Mon Oct 07 15:34:32 2013 -0400
@@ -0,0 +1,48 @@
+@seq1 length=100
+ACGTACGTACGTACGTACGTACGTACGTACGTACGTACGTACGTACGTACGTACGTACGTACGTACGTACGTACGTACGTACGTACGTAC
++seq1 length=100
+123412341234213412341234123412341234123412341234123413241234123412341234123412341234123412
+@seq1_dupl1 length=100
+ACGTACGTACGTACGTACGTACGTACGTACGTACGTACGTACGTACGTACGTACGTACGTACGTACGTACGTACGTACGTACGTACGTAC
++seq1_dupl1 length=100
+123412341234213412341234123412341234123412341234123413241234123412341234123412341234123412
+@seq1_dupl2 length=100
+ACGTACGTACGTACGTACGTACGTACGTACGTACGTACGTACGTACGTACGTACGTACGTACGTACGTACGTACGTACGTACGTACGTAC
++seq1_dupl2 length=100
+123412341234213412341234123412341234123412341234123413241234123412341234123412341234123412
+@seq1_dupl3 length=100
+ACGTACGTACGTACGTACGTACGTACGTACGTACGTACGTACGTACGTACGTACGTACGTACGTACGTACGTACGTACGTACGTACGTAC
++seq1_dupl3 length=100
+123412341234213412341234123412341234123412341234123413241234123412341234123412341234123412
+@seq2 length=200
+ACGTGACGTGACGTGGTGTACACAGAGATATATGAGACACACAGATAGATTGCGTGCGTACGTGTGTGCATGCGTTGTGCCGCGCTCTGTGCGTGTACGTGACGTGACGTGGTGTACACAGAGATATATGAGACACACAGATAGATTGCGTGCGTACGTGTGTGCATGCGTTGTGCCGCGCTCTGTGCGT
++seq2 length=200
+++++++++++++++++..............00000000000000000000333333333333333355555555555555555AAAAAAAAAAAAAA999999999999996666666666666666444444444444444442222222222222222222221111111)))))))))))))))>>>
+@seq3 length=100
+TAGATTGCGTGCGTACGTGTGTGCATGCGTTGTGCCGCGCTCTGTGCGTGTACGTGACGTGACGTGGTGTATAGATTGCGTGCGTACGTG
++seq3 length=100
+FHHFFFFFFDDAA@====AAB===BBBBAAADDDDDDDDAAAADDDDD?????FFFFF??FFFFFFDA@AFFFFFFFFFFFFFFFFCCAB
+@seq3_dupl1 length=100
+TAGATTGCGTGCGTACGTGTGTGCATGCGTTGTGCCGCGCTCTGTGCGTGTACGTGACGTGACGTGGTGTATAGATTGCGTGCGTACGTG
++seq3_dupl1 length=100
+FHHFFFFFFDDAA@====AAB===BBBBAAADDDDDDDDAAAADDDDD?????FFFFF??FFFFFFDA@AFFFFFFFFFFFFFFFFCCAB
+@seq4 length=50
+TAGATTGCGTGCGTACGTGTGTGCATGCGTTGTGCCGCGC
++seq4 length=50
+???CCDDBBBBBAA333:ABB=:::AGFFFFFHHHHFFFF
+@seq5 length=100 Ns_begin=10
+NNNNNNNNNNTACACCAGAGGTGTCTCTGTGTGGGGCCTGTGTGCCAAAAGTGAGAGTTGAGAAGAGGCGTGGAGGAGATGACACACCCC
++seq5 length=100 Ns_begin=10
+!!!!!!!!!!99999999999999AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAEEEEEEEEEEEEEEEEEEEEEEEEEEEEEFFFFFF
+@seq6 length=100 Ns_end=10
+TACACCAGAGGTGTCTCTGTGTGGGGCCTGTGTGCCAAAAGTGAGAGTTGTACACCAGAGGTGTCTCTGTGTGGGGCCTGTGTGCCAAAA
++seq6 length=100 Ns_end=10
+FFFFFFFFFFFFFFFFFFEEEEEEEEEEEEEEEEEEEAAAAAAAAAAAAAAAAAAAAAAAAA9999999999999999999995555555
+@seq7 length=50
+TACACCAGAGGTGTCTCTGTGTGGGTACACCAGAGGTGTC
++seq7 length=50
+!''*((((***+))%%%++)(%%%%).1***-+*''))**
+@seq8 length=50 As=50
+AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
++seq8 length=50 As=50
+5555555555555555555555555555555555555555