# HG changeset patch
# User bgruening
# Date 1384905327 18000
# Node ID 81d711564625bdc94a2577a34c05a284915d7d2c
# Parent  2ecce0ee71834d5456fa4f91b72e30aa3bd95376
Uploaded

diff -r 2ecce0ee7183 -r 81d711564625 tool_dependencies.xml
--- a/tool_dependencies.xml	Tue Nov 05 13:56:08 2013 -0500
+++ b/tool_dependencies.xml	Tue Nov 19 18:55:27 2013 -0500
@@ -1,21 +1,30 @@
 <?xml version="1.0"?>
 <tool_dependency>
     <package name="libgd" version="2.1.0">
-        <repository changeset_revision="dcbab64c0429" name="package_libgd_2_1" owner="iuc" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" />
+        <repository changeset_revision="55e3d764c6c2" name="package_libgd_2_1" owner="iuc" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" />
     </package>
     <package name="perl" version="5.18.1">
-        <repository changeset_revision="978287122b91" name="package_perl_5_18" owner="iuc" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" />
+        <repository changeset_revision="ab58b9f990c5" name="package_perl_5_18" owner="iuc" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" />
     </package>
     <package name="expat" version="2.1.0">
         <repository changeset_revision="8fc96166cddd" name="package_expat_2_1" owner="iuc" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" />
     </package>
+    <package name="bzlib" version="1.0.6">
+        <repository changeset_revision="04e1967b1722" name="package_bzlib_1_0" owner="iuc" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="libpng" version="1.2.5">
+        <repository changeset_revision="a80a3062f066" name="package_libpng_1_2" owner="iuc" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" />
+    </package>
     <package name="trans_proteomic_pipeline" version="4.6.3">
         <install version="1.0">
             <actions>
                 <action type="setup_perl_environment">
-                    <repository changeset_revision="978287122b91" name="package_perl_5_18" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu">
+                    <repository changeset_revision="ab58b9f990c5" name="package_perl_5_18" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu">
                         <package name="perl" version="5.18.1" />
                     </repository>
+                    <repository changeset_revision="8fc96166cddd" name="package_expat_2_1" owner="iuc" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu">
+                        <package name="expat" version="2.1.0" />
+                    </repository>
                     <!-- allow downloading and installing an Perl package from cpan.org-->
                    
                     <package>http://search.cpan.org/CPAN/authors/id/T/TO/TODDR/XML-Parser-2.41.tar.gz</package>
@@ -23,16 +32,20 @@
                         <package>XML::Parser</package>
                     -->
                    <package>http://search.cpan.org/CPAN/authors/id/L/LD/LDS/CGI.pm-3.43.tar.gz</package>
-                   
-                   
                 </action>
                 <action type="change_directory">..</action>
                 <action type="download_file">https://downloads.sourceforge.net/project/sashimi/Trans-Proteomic%20Pipeline%20%28TPP%29/TPP%20v4.6%20%28occupy%29%20rev%203/TPP-4.6.3.tgz</action>
                 <!-- populate the environment variables from the dependend repos -->
                 <action type="set_environment_for_install">
-                    <repository changeset_revision="dcbab64c0429" name="package_libgd_2_1" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu">
+                    <repository changeset_revision="55e3d764c6c2" name="package_libgd_2_1" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu">
                         <package name="libgd" version="2.1.0" />
                     </repository>
+                    <repository changeset_revision="a80a3062f066" name="package_libpng_1_2" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu">
+                        <package name="libpng" version="1.2.5" />
+                    </repository>
+                    <repository changeset_revision="04e1967b1722" name="package_bzlib_1_0" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu">
+                        <package name="bzlib" version="1.0.6" />
+                    </repository>
                 </action>
                 <action type="shell_command">tar xfz TPP-4.6.3.tgz</action>
                 <!-- doanload patched version of htmldoc to prevent a TPP crashed during compilation -->