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author bgruening
date Sun, 30 Jun 2013 15:34:58 -0400
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<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Strict//EN">
<html>
<head><title>dataset_100.dat FastQC Report</title>

<style type="text/css">

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      padding-bottom:1.5em;
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</head>
<body>
<div class="header"><img src="fastqc_icon.png">FastQC Report</div>
<div class="main">
<h3>Sun 29 May 2011</h3>
<h3>dataset_100.dat</h3>
<h2 id="summary">Summary</h2>
<ul>
<li><img src="tick.png" alt="[PASS]"> <a href="#M0">Basic Statistics</a></li>
<li><img src="warning.png" alt="[WARNING]"> <a href="#M1">Per base sequence quality</a></li>
<li><img src="warning.png" alt="[WARNING]"> <a href="#M2">Per sequence quality scores</a></li>
<li><img src="tick.png" alt="[PASS]"> <a href="#M3">Per base sequence content</a></li>
<li><img src="tick.png" alt="[PASS]"> <a href="#M4">Per base GC content</a></li>
<li><img src="warning.png" alt="[WARNING]"> <a href="#M5">Per sequence GC content</a></li>
<li><img src="tick.png" alt="[PASS]"> <a href="#M6">Per base N content</a></li>
<li><img src="tick.png" alt="[PASS]"> <a href="#M7">Sequence Length Distribution</a></li>
<li><img src="tick.png" alt="[PASS]"> <a href="#M8">Sequence Duplication Levels</a></li>
<li><img src="warning.png" alt="[WARNING]"> <a href="#M9">Overrepresented sequences</a></li>
<li><img src="error.png" alt="[FAIL]"> <a href="#M10">Kmer Content</a></li>
</ul>
<div class="module"><h2 id="M0"><img src="tick.png" alt="[FAIL]"> Basic Statistics</h2>
<table>
<tr>
<th>Measure</th>
<th>Value</th>
</tr>
<tr>
<td>Filename</td>
<td>dataset_100.dat</td>
</tr>
<tr>
<td>File type</td>
<td>Conventional base calls</td>
</tr>
<tr>
<td>Encoding</td>
<td>Sanger / Illumina 1.9</td>
</tr>
<tr>
<td>Total Sequences</td>
<td>5000</td>
</tr>
<tr>
<td>Sequence length</td>
<td>54</td>
</tr>
<tr>
<td>%GC</td>
<td>43</td>
</tr>
</table>
<p><a href="#summary">Back to summary</a></div>
<div class="module"><h2 id="M1"><img src="warning.png" alt="[FAIL]"> Per base sequence quality</h2>
<p><img class="indented" src="per_base_quality.png"></p>
<p><a href="#summary">Back to summary</a></div>
<div class="module"><h2 id="M2"><img src="warning.png" alt="[FAIL]"> Per sequence quality scores</h2>
<p><img class="indented" src="per_sequence_quality.png"></p>
<p><a href="#summary">Back to summary</a></div>
<div class="module"><h2 id="M3"><img src="tick.png" alt="[FAIL]"> Per base sequence content</h2>
<p><img class="indented" src="per_base_sequence_content.png"></p>
<p><a href="#summary">Back to summary</a></div>
<div class="module"><h2 id="M4"><img src="tick.png" alt="[FAIL]"> Per base GC content</h2>
<p><img class="indented" src="per_base_gc_content.png"></p>
<p><a href="#summary">Back to summary</a></div>
<div class="module"><h2 id="M5"><img src="warning.png" alt="[FAIL]"> Per sequence GC content</h2>
<p><img class="indented" src="per_sequence_gc_content.png"></p>
<p><a href="#summary">Back to summary</a></div>
<div class="module"><h2 id="M6"><img src="tick.png" alt="[FAIL]"> Per base N content</h2>
<p><img class="indented" src="per_base_n_content.png"></p>
<p><a href="#summary">Back to summary</a></div>
<div class="module"><h2 id="M7"><img src="tick.png" alt="[FAIL]"> Sequence Length Distribution</h2>
<p><img class="indented" src="sequence_length_distribution.png"></p>
<p><a href="#summary">Back to summary</a></div>
<div class="module"><h2 id="M8"><img src="tick.png" alt="[FAIL]"> Sequence Duplication Levels</h2>
<p><img class="indented" src="duplication_levels.png"></p>
<p><a href="#summary">Back to summary</a></div>
<div class="module"><h2 id="M9"><img src="warning.png" alt="[FAIL]"> Overrepresented sequences</h2>
<table>
<tr>
<th>Sequence</th>
<th>Count</th>
<th>Percentage</th>
<th>Possible Source</th>
</tr>
<tr>
<td>CGGAAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAAT</td>
<td>7</td>
<td>0.13999999999999999</td>
<td>Illumina Paired End PCR Primer 2 (96% over 33bp)</td>
</tr>
<tr>
<td>CGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGAC</td>
<td>7</td>
<td>0.13999999999999999</td>
<td>Illumina Paired End PCR Primer 2 (100% over 35bp)</td>
</tr>
</table>
<p><a href="#summary">Back to summary</a></div>
<div class="module"><h2 id="M10"><img src="error.png" alt="[FAIL]"> Kmer Content</h2>
<p><img class="indented" src="kmer_profiles.png"></p>
<table>
<tr>
<th>Sequence</th>
<th>Count</th>
<th>Obs/Exp Overall</th>
<th>Obs/Exp Max</th>
<th>Max Obs/Exp Position</th>
</tr>
<tr>
<td>CCCCC</td>
<td>1110</td>
<td>9.557241</td>
<td>23.193876</td>
<td>44</td>
</tr>
<tr>
<td>AAAAA</td>
<td>2130</td>
<td>4.1300144</td>
<td>5.698024</td>
<td>7</td>
</tr>
<tr>
<td>CTCCC</td>
<td>530</td>
<td>3.5749238</td>
<td>11.56272</td>
<td>11</td>
</tr>
<tr>
<td>CCTCC</td>
<td>510</td>
<td>3.440021</td>
<td>11.56272</td>
<td>14</td>
</tr>
<tr>
<td>CTGGG</td>
<td>465</td>
<td>3.1575248</td>
<td>8.314476</td>
<td>45</td>
</tr>
<tr>
<td>TGGAA</td>
<td>785</td>
<td>2.929684</td>
<td>6.397646</td>
<td>17</td>
</tr>
<tr>
<td>GGGGG</td>
<td>335</td>
<td>2.9167063</td>
<td>10.660779</td>
<td>6</td>
</tr>
<tr>
<td>GAATG</td>
<td>775</td>
<td>2.8923633</td>
<td>10.053445</td>
<td>20</td>
</tr>
<tr>
<td>CCCAG</td>
<td>450</td>
<td>2.8820548</td>
<td>7.8420706</td>
<td>22</td>
</tr>
<tr>
<td>GTGTG</td>
<td>520</td>
<td>2.7661672</td>
<td>6.513526</td>
<td>23</td>
</tr>
<tr>
<td>TGTGT</td>
<td>660</td>
<td>2.744307</td>
<td>6.109576</td>
<td>27</td>
</tr>
<tr>
<td>GGGAG</td>
<td>425</td>
<td>2.7401958</td>
<td>6.315732</td>
<td>6</td>
</tr>
<tr>
<td>ATGGA</td>
<td>730</td>
<td>2.7244196</td>
<td>6.397646</td>
<td>20</td>
</tr>
<tr>
<td>GCTGG</td>
<td>395</td>
<td>2.6821985</td>
<td>6.651581</td>
<td>16</td>
</tr>
<tr>
<td>GGAGG</td>
<td>410</td>
<td>2.643483</td>
<td>7.894665</td>
<td>7</td>
</tr>
<tr>
<td>GGAAT</td>
<td>700</td>
<td>2.612457</td>
<td>7.3115954</td>
<td>19</td>
</tr>
<tr>
<td>GCAGG</td>
<td>400</td>
<td>2.5732677</td>
<td>14.17877</td>
<td>16</td>
</tr>
<tr>
<td>CCTGG</td>
<td>370</td>
<td>2.5068476</td>
<td>6.6367774</td>
<td>7</td>
</tr>
<tr>
<td>CAGCC</td>
<td>380</td>
<td>2.4337354</td>
<td>6.273657</td>
<td>4</td>
</tr>
<tr>
<td>TGGGA</td>
<td>480</td>
<td>2.419065</td>
<td>7.40506</td>
<td>20</td>
</tr>
<tr>
<td>AATGG</td>
<td>645</td>
<td>2.4071925</td>
<td>5.4836965</td>
<td>18</td>
</tr>
<tr>
<td>GCCTC</td>
<td>355</td>
<td>2.3998654</td>
<td>6.622006</td>
<td>2</td>
</tr>
<tr>
<td>CCCTC</td>
<td>355</td>
<td>2.394524</td>
<td>8.259085</td>
<td>13</td>
</tr>
<tr>
<td>CCAGC</td>
<td>370</td>
<td>2.3696895</td>
<td>6.2736564</td>
<td>14</td>
</tr>
<tr>
<td>GGAAG</td>
<td>495</td>
<td>2.3634295</td>
<td>14.031037</td>
<td>2</td>
</tr>
<tr>
<td>GGCTG</td>
<td>345</td>
<td>2.3426795</td>
<td>9.97737</td>
<td>24</td>
</tr>
<tr>
<td>CAGGA</td>
<td>490</td>
<td>2.3343499</td>
<td>13.99981</td>
<td>17</td>
</tr>
<tr>
<td>CCAGG</td>
<td>360</td>
<td>2.3107867</td>
<td>6.2876506</td>
<td>11</td>
</tr>
<tr>
<td>CTGTG</td>
<td>435</td>
<td>2.3088553</td>
<td>9.09864</td>
<td>44</td>
</tr>
<tr>
<td>GCCTG</td>
<td>340</td>
<td>2.3035896</td>
<td>8.295971</td>
<td>5</td>
</tr>
<tr>
<td>TCCCA</td>
<td>460</td>
<td>2.3028264</td>
<td>6.1297736</td>
<td>9</td>
</tr>
<tr>
<td>CTGCC</td>
<td>340</td>
<td>2.2984629</td>
<td>8.277508</td>
<td>10</td>
</tr>
<tr>
<td>CAGCA</td>
<td>480</td>
<td>2.2816207</td>
<td>10.47649</td>
<td>14</td>
</tr>
<tr>
<td>TTCCT</td>
<td>545</td>
<td>2.256056</td>
<td>7.0961456</td>
<td>1</td>
</tr>
<tr>
<td>CTCCT</td>
<td>415</td>
<td>2.1929073</td>
<td>6.4701333</td>
<td>15</td>
</tr>
<tr>
<td>TCCCC</td>
<td>325</td>
<td>2.1921701</td>
<td>6.6072683</td>
<td>28</td>
</tr>
<tr>
<td>CAGGC</td>
<td>335</td>
<td>2.1503155</td>
<td>6.2876506</td>
<td>14</td>
</tr>
<tr>
<td>CCCCA</td>
<td>335</td>
<td>2.1407545</td>
<td>6.259694</td>
<td>20</td>
</tr>
<tr>
<td>TGGTG</td>
<td>400</td>
<td>2.127821</td>
<td>6.513526</td>
<td>9</td>
</tr>
<tr>
<td>CCCCT</td>
<td>315</td>
<td>2.1247187</td>
<td>6.607268</td>
<td>12</td>
</tr>
<tr>
<td>GGCAG</td>
<td>330</td>
<td>2.122946</td>
<td>6.301676</td>
<td>16</td>
</tr>
<tr>
<td>CTCTG</td>
<td>400</td>
<td>2.1183603</td>
<td>5.187652</td>
<td>16</td>
</tr>
<tr>
<td>TTCCA</td>
<td>540</td>
<td>2.1177678</td>
<td>6.7228537</td>
<td>28</td>
</tr>
<tr>
<td>CAGAG</td>
<td>440</td>
<td>2.0961509</td>
<td>5.833255</td>
<td>28</td>
</tr>
<tr>
<td>CCCTG</td>
<td>310</td>
<td>2.095657</td>
<td>6.622006</td>
<td>24</td>
</tr>
<tr>
<td>AGGGA</td>
<td>435</td>
<td>2.0769534</td>
<td>5.846266</td>
<td>1</td>
</tr>
<tr>
<td>CTCAG</td>
<td>410</td>
<td>2.0570977</td>
<td>6.143447</td>
<td>24</td>
</tr>
<tr>
<td>CTTCC</td>
<td>385</td>
<td>2.034384</td>
<td>6.4701333</td>
<td>17</td>
</tr>
<tr>
<td>AGCAG</td>
<td>425</td>
<td>2.0246909</td>
<td>10.499857</td>
<td>15</td>
</tr>
<tr>
<td>AGGAA</td>
<td>570</td>
<td>2.015381</td>
<td>10.390455</td>
<td>18</td>
</tr>
<tr>
<td>TCCTC</td>
<td>380</td>
<td>2.0079634</td>
<td>5.1761065</td>
<td>1</td>
</tr>
<tr>
<td>TCAGC</td>
<td>400</td>
<td>2.0069244</td>
<td>12.286894</td>
<td>44</td>
</tr>
<tr>
<td>AGAGC</td>
<td>420</td>
<td>2.0008712</td>
<td>10.499858</td>
<td>5</td>
</tr>
<tr>
<td>TCCTG</td>
<td>375</td>
<td>1.9859626</td>
<td>6.4845653</td>
<td>8</td>
</tr>
<tr>
<td>TCTCC</td>
<td>375</td>
<td>1.9815428</td>
<td>5.1761065</td>
<td>8</td>
</tr>
<tr>
<td>CACCC</td>
<td>310</td>
<td>1.9809967</td>
<td>6.259694</td>
<td>9</td>
</tr>
<tr>
<td>TGTGG</td>
<td>370</td>
<td>1.9682345</td>
<td>5.210821</td>
<td>4</td>
</tr>
<tr>
<td>GATGG</td>
<td>390</td>
<td>1.9654902</td>
<td>6.1708827</td>
<td>1</td>
</tr>
<tr>
<td>TGGCT</td>
<td>370</td>
<td>1.9638538</td>
<td>9.098641</td>
<td>45</td>
</tr>
<tr>
<td>TCCCT</td>
<td>370</td>
<td>1.9551222</td>
<td>5.1761065</td>
<td>37</td>
</tr>
<tr>
<td>CAGGG</td>
<td>300</td>
<td>1.9299511</td>
<td>6.3016763</td>
<td>21</td>
</tr>
<tr>
<td>AAGAG</td>
<td>545</td>
<td>1.9269869</td>
<td>9.524584</td>
<td>4</td>
</tr>
<tr>
<td>CAGAA</td>
<td>545</td>
<td>1.9226985</td>
<td>6.0476103</td>
<td>6</td>
</tr>
<tr>
<td>CTGAG</td>
<td>380</td>
<td>1.9108309</td>
<td>6.15715</td>
<td>11</td>
</tr>
<tr>
<td>TCTCT</td>
<td>460</td>
<td>1.9041945</td>
<td>5.068676</td>
<td>8</td>
</tr>
<tr>
<td>GAGGC</td>
<td>295</td>
<td>1.897785</td>
<td>6.301676</td>
<td>22</td>
</tr>
<tr>
<td>CCCAC</td>
<td>295</td>
<td>1.885142</td>
<td>6.259694</td>
<td>4</td>
</tr>
<tr>
<td>CCTGC</td>
<td>275</td>
<td>1.8590509</td>
<td>9.93301</td>
<td>6</td>
</tr>
<tr>
<td>CCTGT</td>
<td>350</td>
<td>1.8535651</td>
<td>6.4845653</td>
<td>6</td>
</tr>
<tr>
<td>TTTCC</td>
<td>445</td>
<td>1.8421009</td>
<td>5.0686755</td>
<td>14</td>
</tr>
<tr>
<td>TGCCT</td>
<td>345</td>
<td>1.8270856</td>
<td>5.187652</td>
<td>12</td>
</tr>
<tr>
<td>CACAC</td>
<td>380</td>
<td>1.8022629</td>
<td>5.8073177</td>
<td>17</td>
</tr>
<tr>
<td>CCTCT</td>
<td>340</td>
<td>1.7965988</td>
<td>7.7641597</td>
<td>2</td>
</tr>
<tr>
<td>TTCCC</td>
<td>340</td>
<td>1.7965986</td>
<td>6.470133</td>
<td>18</td>
</tr>
<tr>
<td>GAAGA</td>
<td>500</td>
<td>1.767878</td>
<td>7.792842</td>
<td>26</td>
</tr>
<tr>
<td>CTGGC</td>
<td>260</td>
<td>1.7615684</td>
<td>6.636777</td>
<td>8</td>
</tr>
<tr>
<td>TTCAG</td>
<td>440</td>
<td>1.7294377</td>
<td>9.6255</td>
<td>12</td>
</tr>
<tr>
<td>CTCTC</td>
<td>325</td>
<td>1.717337</td>
<td>5.1761065</td>
<td>3</td>
</tr>
<tr>
<td>GTGGT</td>
<td>320</td>
<td>1.7022567</td>
<td>5.2108207</td>
<td>24</td>
</tr>
<tr>
<td>GGGTG</td>
<td>250</td>
<td>1.7013805</td>
<td>8.333022</td>
<td>28</td>
</tr>
<tr>
<td>TGCTT</td>
<td>410</td>
<td>1.7010024</td>
<td>5.0799813</td>
<td>4</td>
</tr>
<tr>
<td>CTTTG</td>
<td>405</td>
<td>1.6802584</td>
<td>5.0799813</td>
<td>2</td>
</tr>
<tr>
<td>AGAAG</td>
<td>475</td>
<td>1.6794841</td>
<td>5.1952276</td>
<td>22</td>
</tr>
<tr>
<td>ACTCC</td>
<td>330</td>
<td>1.6520276</td>
<td>6.1297736</td>
<td>10</td>
</tr>
<tr>
<td>CTGCT</td>
<td>310</td>
<td>1.6417291</td>
<td>6.4845653</td>
<td>3</td>
</tr>
<tr>
<td>GCCCC</td>
<td>190</td>
<td>1.6395733</td>
<td>6.339712</td>
<td>37</td>
</tr>
<tr>
<td>AGTGG</td>
<td>325</td>
<td>1.6379085</td>
<td>6.1708827</td>
<td>3</td>
</tr>
<tr>
<td>TGGCA</td>
<td>325</td>
<td>1.6342632</td>
<td>6.1571493</td>
<td>16</td>
</tr>
<tr>
<td>GGCTC</td>
<td>240</td>
<td>1.626063</td>
<td>6.636776</td>
<td>25</td>
</tr>
<tr>
<td>ACACA</td>
<td>460</td>
<td>1.6192161</td>
<td>5.1721287</td>
<td>14</td>
</tr>
<tr>
<td>GCTTT</td>
<td>390</td>
<td>1.6180266</td>
<td>5.0799813</td>
<td>5</td>
</tr>
<tr>
<td>TTCTG</td>
<td>390</td>
<td>1.6180266</td>
<td>5.0799813</td>
<td>3</td>
</tr>
<tr>
<td>TCCTT</td>
<td>390</td>
<td>1.6144258</td>
<td>6.0824113</td>
<td>16</td>
</tr>
<tr>
<td>CCCAA</td>
<td>335</td>
<td>1.588837</td>
<td>5.8073177</td>
<td>10</td>
</tr>
<tr>
<td>GCACA</td>
<td>330</td>
<td>1.5686142</td>
<td>5.8202715</td>
<td>18</td>
</tr>
<tr>
<td>GTTCA</td>
<td>395</td>
<td>1.5525635</td>
<td>7.700401</td>
<td>11</td>
</tr>
<tr>
<td>TCTTC</td>
<td>375</td>
<td>1.5523325</td>
<td>5.068676</td>
<td>4</td>
</tr>
<tr>
<td>AGGCA</td>
<td>325</td>
<td>1.5482932</td>
<td>5.8332543</td>
<td>6</td>
</tr>
<tr>
<td>GGGGA</td>
<td>240</td>
<td>1.5474048</td>
<td>6.3157325</td>
<td>7</td>
</tr>
<tr>
<td>CCTTC</td>
<td>290</td>
<td>1.5323931</td>
<td>6.4701333</td>
<td>17</td>
</tr>
<tr>
<td>ATGCC</td>
<td>305</td>
<td>1.5302798</td>
<td>12.286893</td>
<td>22</td>
</tr>
<tr>
<td>GAAGG</td>
<td>320</td>
<td>1.5278738</td>
<td>5.8462653</td>
<td>8</td>
</tr>
<tr>
<td>GGGAT</td>
<td>295</td>
<td>1.4867171</td>
<td>7.40506</td>
<td>21</td>
</tr>
<tr>
<td>TGTGC</td>
<td>280</td>
<td>1.4861598</td>
<td>5.199224</td>
<td>7</td>
</tr>
<tr>
<td>AACAG</td>
<td>420</td>
<td>1.4817125</td>
<td>5.1836653</td>
<td>10</td>
</tr>
<tr>
<td>TCTTT</td>
<td>455</td>
<td>1.4755235</td>
<td>5.5590916</td>
<td>1</td>
</tr>
<tr>
<td>TTGGC</td>
<td>275</td>
<td>1.4596211</td>
<td>5.199223</td>
<td>15</td>
</tr>
<tr>
<td>GAGAT</td>
<td>385</td>
<td>1.4368514</td>
<td>6.397646</td>
<td>27</td>
</tr>
<tr>
<td>TTTGG</td>
<td>345</td>
<td>1.4345239</td>
<td>6.1095753</td>
<td>3</td>
</tr>
<tr>
<td>GGTTC</td>
<td>270</td>
<td>1.4330826</td>
<td>10.398446</td>
<td>10</td>
</tr>
<tr>
<td>CCTTG</td>
<td>265</td>
<td>1.4034137</td>
<td>5.187652</td>
<td>18</td>
</tr>
<tr>
<td>CCCTT</td>
<td>265</td>
<td>1.4002901</td>
<td>5.176106</td>
<td>14</td>
</tr>
<tr>
<td>CTGTT</td>
<td>335</td>
<td>1.3898433</td>
<td>5.0799813</td>
<td>10</td>
</tr>
<tr>
<td>CCTTT</td>
<td>335</td>
<td>1.3867503</td>
<td>5.068676</td>
<td>8</td>
</tr>
<tr>
<td>GGCAC</td>
<td>215</td>
<td>1.3800533</td>
<td>6.2876506</td>
<td>17</td>
</tr>
<tr>
<td>TTGAA</td>
<td>465</td>
<td>1.3564935</td>
<td>6.4295163</td>
<td>7</td>
</tr>
<tr>
<td>CTTGG</td>
<td>255</td>
<td>1.3534669</td>
<td>5.1992235</td>
<td>18</td>
</tr>
<tr>
<td>GTGTT</td>
<td>325</td>
<td>1.3513632</td>
<td>5.091313</td>
<td>28</td>
</tr>
<tr>
<td>GGCCC</td>
<td>155</td>
<td>1.3405302</td>
<td>6.353853</td>
<td>2</td>
</tr>
<tr>
<td>TGGTT</td>
<td>320</td>
<td>1.330573</td>
<td>5.091313</td>
<td>25</td>
</tr>
<tr>
<td>TTCTT</td>
<td>410</td>
<td>1.3295923</td>
<td>7.941558</td>
<td>4</td>
</tr>
<tr>
<td>GGGGT</td>
<td>195</td>
<td>1.327077</td>
<td>8.333022</td>
<td>45</td>
</tr>
<tr>
<td>AAGGA</td>
<td>375</td>
<td>1.3259085</td>
<td>5.1952276</td>
<td>44</td>
</tr>
<tr>
<td>CAGAT</td>
<td>350</td>
<td>1.3033215</td>
<td>5.471493</td>
<td>10</td>
</tr>
<tr>
<td>CTGGT</td>
<td>245</td>
<td>1.3003898</td>
<td>5.1992235</td>
<td>12</td>
</tr>
<tr>
<td>TGTCC</td>
<td>245</td>
<td>1.2974956</td>
<td>5.187652</td>
<td>21</td>
</tr>
<tr>
<td>GCTCC</td>
<td>190</td>
<td>1.2844352</td>
<td>8.277508</td>
<td>26</td>
</tr>
<tr>
<td>GACAG</td>
<td>265</td>
<td>1.2624544</td>
<td>5.833254</td>
<td>27</td>
</tr>
<tr>
<td>GAGCG</td>
<td>195</td>
<td>1.2544682</td>
<td>12.603353</td>
<td>6</td>
</tr>
<tr>
<td>TTGGG</td>
<td>235</td>
<td>1.2500948</td>
<td>6.5135255</td>
<td>6</td>
</tr>
<tr>
<td>AATGC</td>
<td>335</td>
<td>1.2474647</td>
<td>10.031068</td>
<td>21</td>
</tr>
<tr>
<td>GGCTT</td>
<td>235</td>
<td>1.2473125</td>
<td>5.199223</td>
<td>4</td>
</tr>
<tr>
<td>TTTGC</td>
<td>295</td>
<td>1.223892</td>
<td>5.0799813</td>
<td>9</td>
</tr>
<tr>
<td>GGTGT</td>
<td>230</td>
<td>1.223497</td>
<td>5.21082</td>
<td>27</td>
</tr>
<tr>
<td>GATCG</td>
<td>235</td>
<td>1.181698</td>
<td>6.1571493</td>
<td>45</td>
</tr>
<tr>
<td>AGCTC</td>
<td>225</td>
<td>1.1288949</td>
<td>6.1434464</td>
<td>25</td>
</tr>
<tr>
<td>ACCCT</td>
<td>225</td>
<td>1.1263824</td>
<td>6.129773</td>
<td>10</td>
</tr>
<tr>
<td>CGGAA</td>
<td>235</td>
<td>1.119535</td>
<td>9.333206</td>
<td>1</td>
</tr>
<tr>
<td>CCCAT</td>
<td>220</td>
<td>1.1013516</td>
<td>6.129773</td>
<td>21</td>
</tr>
<tr>
<td>TCTTG</td>
<td>265</td>
<td>1.0994283</td>
<td>5.0799813</td>
<td>21</td>
</tr>
<tr>
<td>ATGCA</td>
<td>295</td>
<td>1.0985136</td>
<td>5.4714913</td>
<td>37</td>
</tr>
<tr>
<td>GCTTG</td>
<td>205</td>
<td>1.0880812</td>
<td>5.199223</td>
<td>2</td>
</tr>
<tr>
<td>AGCGG</td>
<td>165</td>
<td>1.061473</td>
<td>12.603352</td>
<td>7</td>
</tr>
<tr>
<td>AACCA</td>
<td>300</td>
<td>1.0560105</td>
<td>5.1721287</td>
<td>22</td>
</tr>
<tr>
<td>AACCT</td>
<td>280</td>
<td>1.0403365</td>
<td>5.4593143</td>
<td>13</td>
</tr>
<tr>
<td>CCGAG</td>
<td>160</td>
<td>1.0270164</td>
<td>12.575301</td>
<td>25</td>
</tr>
<tr>
<td>TTGCC</td>
<td>190</td>
<td>1.0062209</td>
<td>5.1876516</td>
<td>3</td>
</tr>
<tr>
<td>ACTCA</td>
<td>265</td>
<td>0.9846043</td>
<td>5.4593153</td>
<td>11</td>
</tr>
<tr>
<td>CTCAT</td>
<td>250</td>
<td>0.98044825</td>
<td>5.7624474</td>
<td>4</td>
</tr>
<tr>
<td>GTTCC</td>
<td>185</td>
<td>0.9797416</td>
<td>6.4845653</td>
<td>27</td>
</tr>
<tr>
<td>GAACC</td>
<td>205</td>
<td>0.97444224</td>
<td>5.820272</td>
<td>25</td>
</tr>
<tr>
<td>GGCGG</td>
<td>110</td>
<td>0.9555928</td>
<td>10.637051</td>
<td>44</td>
</tr>
<tr>
<td>GCGGT</td>
<td>130</td>
<td>0.8827489</td>
<td>13.303162</td>
<td>8</td>
</tr>
<tr>
<td>GCGGG</td>
<td>100</td>
<td>0.86872077</td>
<td>6.3822303</td>
<td>45</td>
</tr>
<tr>
<td>TGCCG</td>
<td>125</td>
<td>0.846908</td>
<td>14.93275</td>
<td>23</td>
</tr>
<tr>
<td>AGGCG</td>
<td>120</td>
<td>0.7719804</td>
<td>6.3016763</td>
<td>15</td>
</tr>
<tr>
<td>CGGTT</td>
<td>140</td>
<td>0.74307984</td>
<td>10.398446</td>
<td>9</td>
</tr>
<tr>
<td>GCCGA</td>
<td>115</td>
<td>0.738168</td>
<td>12.575301</td>
<td>24</td>
</tr>
<tr>
<td>CGAGA</td>
<td>130</td>
<td>0.61931723</td>
<td>9.333206</td>
<td>26</td>
</tr>
<tr>
<td>CGGGA</td>
<td>85</td>
<td>0.5468194</td>
<td>6.301676</td>
<td>24</td>
</tr>
<tr>
<td>CACGG</td>
<td>85</td>
<td>0.54560244</td>
<td>6.2876506</td>
<td>37</td>
</tr>
</table>
<p><a href="#summary">Back to summary</a></div>
</div><div class="footer">Produced by <a href="http://www.bioinformatics.bbsrc.ac.uk/projects/fastqc/">FastQC</a> (version 0.9.1)</div>
<table>
<tr><td><a href="dataset_100.dat_fastqc.zip">dataset_100.dat_fastqc.zip  (294.3 KB)</a></td></tr>
<tr><td><a href="duplication_levels.png">duplication_levels.png  (14.4 KB)</a></td></tr>
<tr><td><a href="fastqc_data.txt">fastqc_data.txt  (11.6 KB)</a></td></tr>
<tr><td><a href="fastqc_report.html">fastqc_report.html  (19.8 KB)</a></td></tr>
<tr><td><a href="kmer_profiles.png">kmer_profiles.png  (172.2 KB)</a></td></tr>
<tr><td><a href="per_base_gc_content.png">per_base_gc_content.png  (12.0 KB)</a></td></tr>
<tr><td><a href="per_base_n_content.png">per_base_n_content.png  (7.4 KB)</a></td></tr>
<tr><td><a href="per_base_quality.png">per_base_quality.png  (9.4 KB)</a></td></tr>
<tr><td><a href="per_base_sequence_content.png">per_base_sequence_content.png  (23.8 KB)</a></td></tr>
<tr><td><a href="per_sequence_gc_content.png">per_sequence_gc_content.png  (29.4 KB)</a></td></tr>
<tr><td><a href="per_sequence_quality.png">per_sequence_quality.png  (21.7 KB)</a></td></tr>
<tr><td><a href="sequence_length_distribution.png">sequence_length_distribution.png  (18.8 KB)</a></td></tr>
<tr><td><a href="summary.txt">summary.txt  (487 B)</a></td></tr>
</table><p/>
<a href="http://www.bioinformatics.bbsrc.ac.uk/projects/fastqc/">FastQC documentation and full attribution is here</a><br/><hr/>
FastQC was run by Galaxy using the rgenetics rgFastQC wrapper - see http://rgenetics.org for details and licensing
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