Mercurial > repos > bgruening > paralyzer

diff test-data/input.ini @ 0:36a82d719be9 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/paralyzer commit 4e17177d661c3022f628564c443787aea98fddff
author bgruening
date Mon, 05 Dec 2016 15:20:16 -0500
parents
children
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/input.ini	Mon Dec 05 15:20:16 2016 -0500
@@ -0,0 +1,22 @@
+#all values are the default ones
+BANDWIDTH=3
+CONVERSION=T>C
+MINIMUM_READ_COUNT_PER_GROUP=5
+MINIMUM_READ_COUNT_PER_CLUSTER=2
+MINIMUM_READ_COUNT_FOR_KDE=3
+MINIMUM_CLUSTER_SIZE=11
+MINIMUM_CONVERSION_LOCATIONS_FOR_CLUSTER=2
+MINIMUM_CONVERSION_COUNT_FOR_CLUSTER=2
+MINIMUM_READ_COUNT_FOR_CLUSTER_INCLUSION=1
+MINIMUM_READ_LENGTH=20
+MAXIMUM_NUMBER_OF_NON_CONVERSION_MISMATCHES=1
+
+EXTEND_BY_READ
+
+GENOME_2BIT_FILE=input.2bit
+SAM_FILE=input.sam=COLLAPSED
+
+OUTPUT_DISTRIBUTIONS_FILE=out.distribution
+OUTPUT_GROUPS_FILE=out.groups
+OUTPUT_CLUSTERS_FILE=out.clusters
+#OUTPUT_READS_FILE=out_PARalyzer_Utilized.sam