# HG changeset patch # User bgruening # Date 1376061244 14400 # Node ID e37f3e0504820ba6d7352b2afa0a9350cc9773cf Uploaded diff -r 000000000000 -r e37f3e050482 tool_dependencies.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_dependencies.xml Fri Aug 09 11:14:04 2013 -0400 @@ -0,0 +1,78 @@ + + + + + + + + + + + + + + + + + + + + + + https://pypi.python.org/packages/source/s/scikit-learn/scikit-learn-0.14.1.tar.gz + + + + + + + + + + + + + + + + + + + $INSTALL_DIR/lib/python + + export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python && + + #if env.get('ATLAS_LIB_DIR', False): + export ATLAS=$ATLAS_LIB_DIR/libatlas.a && + #end if + #if env.get('LAPACK_LIB_DIR', False): + export BLAS=$LAPACK_LIB_DIR/libblas.a && + export LAPACK=$LAPACK_LIB_DIR/liblapack.a && + #end if + + export PATH=$PATH:$PATH_NUMPY && + export PYTHONPATH=$PYTHONPATH:$PYTHONPATH_NUMPY:$PYTHONPATH_SCIPY:$PYTHONPATH_MATPLOTLIB && + + python setup.py install --install-lib $INSTALL_DIR/lib/python + + + $INSTALL_DIR/lib/python + $INSTALL_DIR/bin + $ENV[PYTHONPATH_NUMPY] + $ENV[PATH_NUMPY] + $ENV[PYTHONPATH_SCIPY] + $ENV[PATH_SCIPY] + $ENV[PYTHONPATH_MATPLOTLIB] + + $INSTALL_DIR/lib/python + + + + + Compiling scikit-learn requires a C compiler (typically gcc). + The PYTHONPATH for scikit-learn can be accessed through PYTHONPATH_SCIKIT_LEARN. + + Wrapper development: https://github.com/bgruening/galaxytools/tree/master/orphan_tool_dependencies + + +