annotate tool_dependencies.xml @ 16:5afc30651412 draft default tip

Uploaded
author bgruening
date Thu, 08 Jan 2015 10:00:22 -0500
parents 191967e6496b
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
67c8b836d765 Uploaded
bgruening
parents:
diff changeset
1 <?xml version="1.0"?>
67c8b836d765 Uploaded
bgruening
parents:
diff changeset
2 <tool_dependency>
16
5afc30651412 Uploaded
bgruening
parents: 15
diff changeset
3 <package name="R" version="3.1.2">
5afc30651412 Uploaded
bgruening
parents: 15
diff changeset
4 <repository changeset_revision="f0626dac6765" name="package_r_3_1_2" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
0
67c8b836d765 Uploaded
bgruening
parents:
diff changeset
5 </package>
2
4bc1c94efdff Uploaded
bgruening
parents: 1
diff changeset
6 <package name="readline" version="6.2">
16
5afc30651412 Uploaded
bgruening
parents: 15
diff changeset
7 <repository changeset_revision="4e4f3dc94efa" name="package_readline_6_2" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
2
4bc1c94efdff Uploaded
bgruening
parents: 1
diff changeset
8 </package>
16
5afc30651412 Uploaded
bgruening
parents: 15
diff changeset
9 <package name="rpy2_2_3_6" version="2.3.6">
0
67c8b836d765 Uploaded
bgruening
parents:
diff changeset
10 <install version="1.0">
67c8b836d765 Uploaded
bgruening
parents:
diff changeset
11 <actions>
1
dd4ad562094e Uploaded
bgruening
parents: 0
diff changeset
12 <action type="download_by_url">https://pypi.python.org/packages/source/r/rpy2/rpy2-2.3.6.tar.gz</action>
0
67c8b836d765 Uploaded
bgruening
parents:
diff changeset
13 <action type="set_environment_for_install">
16
5afc30651412 Uploaded
bgruening
parents: 15
diff changeset
14 <repository changeset_revision="4e4f3dc94efa" name="package_readline_6_2" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
2
4bc1c94efdff Uploaded
bgruening
parents: 1
diff changeset
15 <package name="readline" version="6.2" />
3
90e8c7406730 Uploaded
bgruening
parents: 2
diff changeset
16 </repository>
16
5afc30651412 Uploaded
bgruening
parents: 15
diff changeset
17 <repository changeset_revision="f0626dac6765" name="package_r_3_1_2" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
5afc30651412 Uploaded
bgruening
parents: 15
diff changeset
18 <package name="R" version="3.1.2" />
11
a2b040ce72d7 Uploaded
bernhardlutz
parents: 10
diff changeset
19 </repository>
0
67c8b836d765 Uploaded
bgruening
parents:
diff changeset
20 </action>
67c8b836d765 Uploaded
bgruening
parents:
diff changeset
21
67c8b836d765 Uploaded
bgruening
parents:
diff changeset
22 <action type="shell_command">
7
738e7d34477d Uploaded
bgruening
parents: 6
diff changeset
23 export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python &amp;&amp;
10
5744015104ae Uploaded
bgruening
parents: 9
diff changeset
24 export LDFLAGS="-L$READLINE_LIB_PATH -lreadline" &amp;&amp;
5744015104ae Uploaded
bgruening
parents: 9
diff changeset
25 export CPPFLAGS="-I$READLINE_INCLUDE_PATH" &amp;&amp;
7
738e7d34477d Uploaded
bgruening
parents: 6
diff changeset
26 python setup.py build --r-home $R_HOME --r-home-lib $R_HOME/lib install --install-lib $INSTALL_DIR/lib/python
738e7d34477d Uploaded
bgruening
parents: 6
diff changeset
27 </action>
0
67c8b836d765 Uploaded
bgruening
parents:
diff changeset
28 <action type="set_environment">
1
dd4ad562094e Uploaded
bgruening
parents: 0
diff changeset
29 <environment_variable action="append_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable>
14
963b9a9fa6fc Uploaded
bernhardlutz
parents: 13
diff changeset
30 <environment_variable action="append_to" name="LD_LIBRARY_PATH">$ENV[READLINE_LIB_PATH]</environment_variable>
963b9a9fa6fc Uploaded
bernhardlutz
parents: 13
diff changeset
31 <environment_variable action="append_to" name="LD_LIBRARY_PATH">$ENV[RHOME]/lib</environment_variable>
0
67c8b836d765 Uploaded
bgruening
parents:
diff changeset
32 </action>
67c8b836d765 Uploaded
bgruening
parents:
diff changeset
33 </actions>
67c8b836d765 Uploaded
bgruening
parents:
diff changeset
34 </install>
3
90e8c7406730 Uploaded
bgruening
parents: 2
diff changeset
35 <readme>rpy2 is a redesign and rewrite of rpy. It is providing a low-level interface to R, a proposed high-level interface, including wrappers to graphical libraries, as well as R-like structures and functions.
90e8c7406730 Uploaded
bgruening
parents: 2
diff changeset
36 http://rpy.sourceforge.net/rpy2.html
90e8c7406730 Uploaded
bgruening
parents: 2
diff changeset
37 </readme>
0
67c8b836d765 Uploaded
bgruening
parents:
diff changeset
38 </package>
67c8b836d765 Uploaded
bgruening
parents:
diff changeset
39 </tool_dependency>