Mercurial > repos > bgruening > package_r_3_0_1
changeset 1:b16fa4edfe55 draft
Uploaded
| author | bgruening |
|---|---|
| date | Mon, 01 Jul 2013 08:19:37 -0400 |
| parents | 91076df3471b |
| children | 1d5580f2ece0 |
| files | tool_dependencies.xml |
| diffstat | 1 files changed, 14 insertions(+), 23 deletions(-) [+] |
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--- a/tool_dependencies.xml Mon Jul 01 06:23:09 2013 -0400 +++ b/tool_dependencies.xml Mon Jul 01 08:19:37 2013 -0400 @@ -1,44 +1,35 @@ <?xml version="1.0"?> <tool_dependency> - <package name="lapack" version="3.4.2"> - <repository changeset_revision="a6b8f46acca7" name="package_lapack_3_4" owner="bgruening" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" /> - </package> - <package name="atlas" version="3.10.1"> - <repository changeset_revision="25dc49b0d6d5" name="package_atlas_3_10" owner="bgruening" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" /> + <package name="R_3_0_1" version="3.0.1"> + <repository changeset_revision="91076df3471b" name="package_r_3_0_1" owner="bgruening" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" /> </package> <package name="readline" version="6.2"> <repository changeset_revision="b936498ae90c" name="package_readline_6_2" owner="bgruening" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" /> </package> - - <package name="R_3_0_1" version="3.0.1"> + <package name="rpy2_2_3_6" version="2.3.6"> <install version="1.0"> <actions> - <action type="download_by_url">http://cran.ms.unimelb.edu.au/src/base/R-3/R-3.0.1.tar.gz</action> + <action type="download_by_url">https://pypi.python.org/packages/source/r/rpy2/rpy2-2.3.6.tar.gz</action> <action type="set_environment_for_install"> - <repository changeset_revision="25dc49b0d6d5" name="package_atlas_3_10" owner="bgruening" toolshed="http://testtoolshed.g2.bx.psu.edu"> - <package name="atlas" version="3.10.1" /> - </repository> - <repository changeset_revision="a6b8f46acca7" name="package_lapack_3_4" owner="bgruening" toolshed="http://testtoolshed.g2.bx.psu.edu"> - <package name="lapack" version="3.4.2" /> - </repository> <repository changeset_revision="b936498ae90c" name="package_readline_6_2" owner="bgruening" toolshed="http://testtoolshed.g2.bx.psu.edu"> <package name="readline" version="6.2" /> </repository> + <repository changeset_revision="91076df3471b" name="package_r_3_0_1" owner="bgruening" toolshed="http://testtoolshed.g2.bx.psu.edu"> + <package name="R_3_0_1" version="3.0.1" /> + </repository> </action> <action type="shell_command"> - export LDFLAGS=-L$READLINE_LIB_PATH && - export CPPFLAGS=-I$READLINE_INCLUDE_PATH && - ./configure --with-lapack="-L$ATLAS_LIB_DIR -llapack -lcblas" --with-blas="$LAPACK_LIB_DIR" --enable-R-shlib --with-x=no --with-readline=yes --prefix=$INSTALL_DIR && make && make install - </action> + export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python && + export LDFLAGS=-L$READLINE_LIB_PATH && + python setup.py build --r-home $R_HOME --r-home-lib $R_HOME/lib install --home $INSTALL_DIR</action> <action type="set_environment"> - <environment_variable action="set_to" name="R_HOME">$INSTALL_DIR/lib/R</environment_variable> - <environment_variable action="set_to" name="R_LIBS">$INSTALL_DIR/lib/R/library</environment_variable> - <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/lib/R/bin</environment_variable> - <environment_variable action="append_to" name="LD_LIBRARY_PATH">$INSTALL_DIR/lib/R/lib</environment_variable> + <environment_variable action="append_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable> </action> </actions> </install> - <readme>R is a free software environment for statistical computing and graphics. http://www.r-project.org/</readme> + <readme>rpy2 is a redesign and rewrite of rpy. It is providing a low-level interface to R, a proposed high-level interface, including wrappers to graphical libraries, as well as R-like structures and functions. + http://rpy.sourceforge.net/rpy2.html + </readme> </package> </tool_dependency>