# HG changeset patch
# User bgruening
# Date 1372674189 14400
# Node ID 91076df3471b2fb9dac9197285ecb80aec4b2850

Uploaded

diff -r 000000000000 -r 91076df3471b tool_dependencies.xml
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Mon Jul 01 06:23:09 2013 -0400
@@ -0,0 +1,44 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="lapack" version="3.4.2">
+        <repository changeset_revision="a6b8f46acca7" name="package_lapack_3_4" owner="bgruening" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="atlas" version="3.10.1">
+        <repository changeset_revision="25dc49b0d6d5" name="package_atlas_3_10" owner="bgruening" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="readline" version="6.2">
+        <repository changeset_revision="b936498ae90c" name="package_readline_6_2" owner="bgruening" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" />
+    </package>
+
+    <package name="R_3_0_1" version="3.0.1">
+        <install version="1.0">
+            <actions>
+                <action type="download_by_url">http://cran.ms.unimelb.edu.au/src/base/R-3/R-3.0.1.tar.gz</action>
+                <action type="set_environment_for_install">
+                    <repository changeset_revision="25dc49b0d6d5" name="package_atlas_3_10" owner="bgruening" toolshed="http://testtoolshed.g2.bx.psu.edu">
+                        <package name="atlas" version="3.10.1" />
+                    </repository>
+                    <repository changeset_revision="a6b8f46acca7" name="package_lapack_3_4" owner="bgruening" toolshed="http://testtoolshed.g2.bx.psu.edu">
+                        <package name="lapack" version="3.4.2" />
+                    </repository>
+                    <repository changeset_revision="b936498ae90c" name="package_readline_6_2" owner="bgruening" toolshed="http://testtoolshed.g2.bx.psu.edu">
+                        <package name="readline" version="6.2" />
+                    </repository>
+                </action>
+
+                <action type="shell_command">
+                    export LDFLAGS=-L$READLINE_LIB_PATH &amp;&amp; 
+                    export CPPFLAGS=-I$READLINE_INCLUDE_PATH &amp;&amp; 
+                    ./configure --with-lapack="-L$ATLAS_LIB_DIR -llapack -lcblas" --with-blas="$LAPACK_LIB_DIR" --enable-R-shlib  --with-x=no --with-readline=yes --prefix=$INSTALL_DIR &amp;&amp; make &amp;&amp; make install
+                </action>
+                <action type="set_environment">
+                    <environment_variable action="set_to" name="R_HOME">$INSTALL_DIR/lib/R</environment_variable>
+                    <environment_variable action="set_to" name="R_LIBS">$INSTALL_DIR/lib/R/library</environment_variable>
+                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/lib/R/bin</environment_variable>
+                    <environment_variable action="append_to" name="LD_LIBRARY_PATH">$INSTALL_DIR/lib/R/lib</environment_variable>
+                </action>
+            </actions>
+        </install>
+        <readme>R is a free software environment for statistical computing and graphics. http://www.r-project.org/</readme>
+    </package>
+</tool_dependency>