Mercurial > repos > bgruening > package_openms_latest
changeset 4:833d13cd7a6c draft
Uploaded
| author | bgruening |
|---|---|
| date | Thu, 09 Oct 2014 17:47:01 -0400 |
| parents | f42172d442c8 |
| children | 3f2ebd5d2f1b |
| files | tool_dependencies.xml |
| diffstat | 1 files changed, 7 insertions(+), 16 deletions(-) [+] |
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--- a/tool_dependencies.xml Thu Oct 09 16:44:01 2014 -0400 +++ b/tool_dependencies.xml Thu Oct 09 17:47:01 2014 -0400 @@ -12,13 +12,7 @@ <package name="bzlib" version="1.0.6"> <repository changeset_revision="2dec91192fc7" name="package_bzlib_1_0" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> </package> - <package name="libx11" version="1.5.0"> - <repository changeset_revision="6367d6fc9f82" name="package_libx11_1_5_0" owner="devteam" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> - </package> - <package name="libxext-proto" version="7.2.1"> - <repository changeset_revision="fc807cafcef7" name="package_libxext_proto_7_2_1" owner="devteam" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" /> - </package> - <package name="openms" version="1.11.1"> + <package name="openms" version="1.12"> <install version="1.0"> <actions> <action type="download_by_url">http://share.gruenings.eu/OpenMS.tar.bz2</action> @@ -36,12 +30,6 @@ <repository changeset_revision="2dec91192fc7" name="package_bzlib_1_0" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu"> <package name="bzlib" version="1.0.6" /> </repository> - <repository changeset_revision="6367d6fc9f82" name="package_libx11_1_5_0" owner="devteam" toolshed="https://testtoolshed.g2.bx.psu.edu"> - <package name="libx11" version="1.5.0" /> - </repository> - <package name="package_libxext_proto_7_2_1" owner="devteam"> - <repository name="libxext-proto" version="7.2.1" /> - </package> </action> <action type="change_directory">contrib</action> @@ -49,16 +37,19 @@ <action type="shell_command">cmake . -DBUILD_TYPE=LIBSVM</action> <action type="shell_command">cmake . -DBUILD_TYPE=XERCESC</action> <action type="shell_command">cmake . -DBUILD_TYPE=GSL</action> - <action type="shell_command">cmake . -DBUILD_TYPE=BOOST</action> + <action type="shell_command">cmake . -DBUILD_TYPE=BOOST -DNUMBER_OF_JOBS=4</action> <action type="shell_command">cmake . -DBUILD_TYPE=COINOR</action> <action type="shell_command">cmake . -DBUILD_TYPE=BZIP2</action> <action type="shell_command">cmake . -DBUILD_TYPE=GLPK</action> <action type="shell_command">cmake . -DBUILD_TYPE=EIGEN</action> + <action type="shell_command">cmake . -DBUILD_TYPE=WILDMAGIC</action> <action type="change_directory">..</action> - <action type="shell_command">cmake . -DINSTALL_PREFIX=$INSTALL_DIR</action> - <action type="shell_command">make doc_minimal</action> + <action type="shell_command">export ENABLE_TUTORIALS=Off && export ENABLE_STYLE_TESTING=Off && export ENABLE_UNITYBUILD=Off && export WITH_GUI=Off && cmake . -DINSTALL_PREFIX=$INSTALL_DIR</action> + <!--action type="shell_command">make doc_minimal</action--> <action type="shell_command">make install</action> + <!-- ToDo can we get it easily without svn? Is this included in the final tarball? --> + <!-- svn checkout http://svn.code.sf.net/p/open-ms/code/THIRDPARTY/SEARCHENGINES/Linux/64bit/ _searchengines --> <action type="set_environment"> <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$INSTALL_DIR/lib</environment_variable>