# HG changeset patch
# User bgruening
# Date 1368521299 14400
# Node ID 785426417f15e5e8a43dfc6ea37b539b0789d130
# Parent  13d2ea9436b3dd063552e703227abe4a797f76a5
Uploaded

diff -r 13d2ea9436b3 -r 785426417f15 tool_dependencies.xml
--- a/tool_dependencies.xml	Fri Apr 26 10:49:56 2013 -0400
+++ b/tool_dependencies.xml	Tue May 14 04:48:19 2013 -0400
@@ -1,12 +1,23 @@
 <tool_dependency>
+    <package name="eigen" version="2.0.17">
+        <repository toolshed="http://testtoolshed.g2.bx.psu.edu/" name="package_eigen_2_0" owner="bgruening" changeset_revision="09eb05087cd0" prior_installation_required="True" />
+    </package>
     <package name="openbabel" version="2.3.2">
         <install version="1.0">
             <actions>
                 <action type="download_by_url">http://downloads.sourceforge.net/project/openbabel/openbabel/2.3.2/openbabel-2.3.2.tar.gz</action>
+
+                <!-- populate the environment variables from the dependend repos -->
+                <action type="set_environment_for_install">
+                    <repository toolshed="http://testtoolshed.g2.bx.psu.edu/" name="package_eigen_2_0" owner="bgruening" changeset_revision="09eb05087cd0">
+                        <package name="eigen" version="2.0.17" />
+                    </repository>
+                </action>
+
                 <!--
                     Huge hack, to point to the actual python lib path. Cmake gets confused with mixed python versions (2.x and 3.x) and we need to point explicitely to the recent version.
                 -->
-                <action type="shell_command">cmake . -DPYTHON_BINDINGS=ON -DCMAKE_INSTALL_PREFIX=$INSTALL_DIR -DPYTHON_LIBRARY=`python -c 'import sys; print "%s/lib/python%s.%s/config/libpython%s.%s.so" % (sys.exec_prefix, sys.version_info.major, sys.version_info.minor, sys.version_info.major, sys.version_info.minor)'`</action>
+                <action type="shell_command">cmake . -DPYTHON_BINDINGS=ON -DCMAKE_INSTALL_PREFIX=$INSTALL_DIR -DEIGEN2_INCLUDE_DIR=$EIGEN_SOURCE_PATH -DPYTHON_LIBRARY=`python -c 'import sys; print "%s/lib/python%s.%s/config/libpython%s.%s.so" % (sys.exec_prefix, sys.version_info.major, sys.version_info.minor, sys.version_info.major, sys.version_info.minor)'`</action>
                 <action type="shell_command">make</action>
                 <action type="shell_command">make install</action>
                 <action type="set_environment">