comparison tool_dependencies.xml @ 4:dc6a907dd737

Uploaded

3:785426417f15

<tool_dependency>
    <package name="eigen" version="2.0.17">
        <repository toolshed="http://testtoolshed.g2.bx.psu.edu/" name="package_eigen_2_0" owner="bgruening" changeset_revision="09eb05087cd0" prior_installation_required="True" />
    </package>
    <package name="openbabel" version="2.3.2">
        <install version="1.0">
            <actions>
                <action type="download_by_url">http://downloads.sourceforge.net/project/openbabel/openbabel/2.3.2/openbabel-2.3.2.tar.gz</action>

                <!-- populate the environment variables from the dependend repos -->
                <action type="set_environment_for_install">
                    <repository toolshed="http://testtoolshed.g2.bx.psu.edu/" name="package_eigen_2_0" owner="bgruening" changeset_revision="09eb05087cd0">
                        <package name="eigen" version="2.0.17" />
                    </repository>
                </action>

                <!--
                    Huge hack, to point to the actual python lib path. Cmake gets confused with mixed python versions (2.x and 3.x) and we need to point explicitely to the recent version.
                -->
                <action type="shell_command">cmake . -DPYTHON_BINDINGS=ON -DCMAKE_INSTALL_PREFIX=$INSTALL_DIR -DEIGEN2_INCLUDE_DIR=$EIGEN_SOURCE_PATH -DPYTHON_LIBRARY=`python -c 'import sys; print "%s/lib/python%s.%s/config/libpython%s.%s.so" % (sys.exec_prefix, sys.version_info.major, sys.version_info.minor, sys.version_info.major, sys.version_info.minor)'`</action>
                <action type="shell_command">make</action>
                <action type="shell_command">make install</action>
                <action type="set_environment">
                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
                    <environment_variable name="PYTHONPATH" action="prepend_to">$INSTALL_DIR/lib</environment_variable>

                    <environment_variable name="OPENBABEL_LIB_DIR" action="set_to">$INSTALL_DIR/lib</environment_variable>
                    <environment_variable name="OPENBABEL_INCLUDE_DIR" action="set_to">$INSTALL_DIR/include</environment_variable>
                </action>
            </actions>
        </install>
        <readme>Compiling OpenBabel requires g++ and CMake 2.4+. Optional but required for a few features is Eigen version 2 or newer and the cairo development libraries. OPENBABEL_INCLUDE_DIR and OPENBABEL_LIB_DIR can be accessed from other tool wrappers.</readme>
    </package>
</tool_dependency>

4:dc6a907dd737

<tool_dependency>
    <package name="eigen3" version="3.1.3">
        <repository toolshed="http://testtoolshed.g2.bx.psu.edu/" name="package_eigen_3_1" owner="bgruening" changeset_revision="b72b882b30b4" prior_installation_required="True" />
    </package>
    <package name="openbabel" version="2.3.2">
        <install version="1.0">
            <actions>
                <action type="download_by_url">http://downloads.sourceforge.net/project/openbabel/openbabel/2.3.2/openbabel-2.3.2.tar.gz</action>

                <!-- populate the environment variables from the dependend repos -->
                <action type="set_environment_for_install">
                    <repository toolshed="http://testtoolshed.g2.bx.psu.edu/" name="package_eigen_3_1" owner="bgruening" changeset_revision="b72b882b30b4">
                        <package name="eigen3" version="3.1.3" />
                    </repository>
                </action>

                <!--
                    Huge hack, to point to the actual python lib path. Cmake gets confused with mixed python versions (2.x and 3.x) and we need to point explicitely to the recent version.
                -->
                <action type="shell_command">cmake . -DPYTHON_BINDINGS=ON -DCMAKE_INSTALL_PREFIX=$INSTALL_DIR -DEIGEN3_INCLUDE_DIR=$EIGEN3_SOURCE_PATH -DPYTHON_LIBRARY=`python -c 'import sys; print "%s/lib/python%s.%s/config/libpython%s.%s.so" % (sys.exec_prefix, sys.version_info.major, sys.version_info.minor, sys.version_info.major, sys.version_info.minor)'`</action>
                <action type="shell_command">make</action>
                <action type="shell_command">make install</action>
                <action type="set_environment">
                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
                    <environment_variable name="PYTHONPATH" action="prepend_to">$INSTALL_DIR/lib</environment_variable>

                    <environment_variable name="OPENBABEL_LIB_DIR" action="set_to">$INSTALL_DIR/lib</environment_variable>
                    <environment_variable name="OPENBABEL_INCLUDE_DIR" action="set_to">$INSTALL_DIR/include</environment_variable>
                </action>
            </actions>
        </install>
        <readme>Compiling OpenBabel requires g++ and CMake 2.4+. Optional but required for a few features are the cairo development libraries. OPENBABEL_INCLUDE_DIR and OPENBABEL_LIB_DIR can be accessed from other tool wrappers.</readme>
    </package>
</tool_dependency>