# HG changeset patch
# User bernhardlutz
# Date 1389731827 18000
# Node ID 6d5160860a702cd6ef7db12ff075503bff7c1585

Uploaded

diff -r 000000000000 -r 6d5160860a70 tool_dependencies.xml
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Tue Jan 14 15:37:07 2014 -0500
@@ -0,0 +1,25 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="vienna_rna" version="1.8.5">
+        <repository changeset_revision="18c7086dbb43" name="package_vienna_rna_1_8" owner="bgruening" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="intarna" version="1.0">
+        <install version="1.0">
+            <actions>
+                <action type="download_by_url">http://www.bioinf.uni-freiburg.de/Software/IntaRNA/intarna-1.2.5.tar.gz</action>
+                <action type="set_environment_for_install">
+                    <repository changeset_revision="18c7086dbb43" name="package_vienna_rna_1_8" owner="bgruening" toolshed="http://testtoolshed.g2.bx.psu.edu">
+                        <package name="vienna_rna" version="1.8.5" />
+                    </repository>
+                </action>
+                <action type="shell_command">./configure --prefix $INSTALL_DIR --with-RNA=$ROOT_VIENNA_RNA_DIR</action>
+                <action type="make_install" />
+                <action type="set_environment">
+                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
+                </action>
+                
+            </actions>
+        </install>
+        <readme>Compiling IntaRNA requires a C compiler (typically gcc)</readme>
+    </package>
+</tool_dependency>