Mercurial > repos > bgruening > package_genometools_1_5_7

changeset 0:d89b3134e32c draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_genometools_1_5_7 commit b2d06ecd8075bd4b4543bb078f5adffdc607785d
author bgruening
date Wed, 23 Dec 2015 04:55:15 -0500
parents
children
files tool_dependencies.xml
diffstat 1 files changed, 35 insertions(+), 0 deletions(-) [+]
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Wed Dec 23 04:55:15 2015 -0500
@@ -0,0 +1,35 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="cairo" version="1.14.2">
+        <repository changeset_revision="66ad0cc12007" name="package_cairo_1_14_2" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="genometools" version="1.5.7">
+        <install version="1.0">
+            <actions>
+                <action sha256sum="b84a2eab9e7b8fb3e7acb5a1b9df40e8d07394d18357b4bb85c5a9004f3339e5" type="download_by_url">http://genometools.org/pub/genometools-1.5.7.tar.gz</action>
+                <action type="set_environment_for_install">
+                    <repository changeset_revision="8f011e7388e1" name="package_cairo_1_12_14" owner="devteam" toolshed="https://testtoolshed.g2.bx.psu.edu">
+                        <package name="cairo" version="1.12.14" />
+                    </repository>
+                </action>
+                <action type="make_install" />
+                
+                <action type="make_directory">$INSTALL_DIR/lib/python</action>
+                <action type="shell_command">python setup.py install --install-lib $INSTALL_DIR/lib/python --install-scripts $INSTALL_DIR/bin</action>
+                <action type="set_environment">
+                    <environment_variable action="set_to" name="GENOMETOOLS_ROOT_DIR">$INSTALL_DIR</environment_variable>
+                    <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable>
+                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR</environment_variable>
+                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
+                </action>
+            </actions>
+        </install>
+        <readme>
+The GenomeTools genome analysis system is a collection of bioinformatics tools (in the realm of genome informatics) combined into a single binary named gt. 
+It is based on a C library named “libgenometools” which consists of several modules.
+
+For more details, see:
+http://genometools.org/
+        </readme>
+    </package>
+</tool_dependency>