# HG changeset patch
# User bgruening
# Date 1376059194 14400
# Node ID 0464d82a4c3fac34c6bfd1872603062247e40123

inital version

diff -r 000000000000 -r 0464d82a4c3f tool_dependencies.xml
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Fri Aug 09 10:39:54 2013 -0400
@@ -0,0 +1,39 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="bzlib" version="1.0.6">
+        <repository changeset_revision="58a38de96f9b" name="package_bzlib_1_0" owner="bgruening" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="boost" version="1.54.0">
+        <install version="1.0">
+            <actions>
+                <action type="download_by_url">http://sourceforge.net/projects/boost/files/boost/1.54.0/boost_1_54_0.tar.bz2</action>
+
+                <!-- populate the environment variables from the dependend repos -->
+                <action type="set_environment_for_install">
+                    <repository changeset_revision="58a38de96f9b" name="package_bzlib_1_0" owner="bgruening" toolshed="http://testtoolshed.g2.bx.psu.edu">
+                        <package name="bzlib" version="1.0.6" />
+                    </repository>
+                </action>
+
+                <action type="shell_command">./bootstrap.sh</action>
+                <!-- try to set the right architecture with uname -m -->
+                <action type="shell_command">
+                    if [ $(uname -m) == 'x86_64' ]; then 
+                        ./bjam install --prefix=$INSTALL_DIR/boost/ -sBZIP2_INCLUDE=$BZLIB_INCLUDE_DIR -sBZIP2_LIB=$BZLIB_LIB_DIR -sBZIP2_SOURCE=$BZLIB_SOURCE_DIR; 
+                    else 
+                        ./bjam address-model=64 cflags=-fPIC cxxflags=-fPIC install --prefix=$INSTALL_DIR/boost/ -sBZIP2_INCLUDE=$BZLIB_INCLUDE_DIR -sBZIP2_LIB=$BZLIB_LIB_DIR -sBZIP2_SOURCE=$BZLIB_SOURCE_DIR; 
+                    fi;
+                </action>
+                <action type="set_environment">
+                    <environment_variable action="set_to" name="BOOST_ROOT_DIR">$INSTALL_DIR/boost</environment_variable>
+                    <environment_variable action="append_to" name="LD_LIBRARY_PATH">$INSTALL_DIR/boost/lib/</environment_variable>
+                </action>
+            </actions>
+        </install>
+        <readme>
+        Compiling boost requires a C++ compiler (typically gcc). 
+        You can access the boost root directory through the $BOOST_ROOT_DIR system variable. All modules will be build.
+        Development of that wrapper happens in https://github.com/bgruening/galaxytools/tree/master/orphan_tool_dependencies/.
+        </readme>
+    </package>
+</tool_dependency>