Mercurial > repos > bgruening > osra
changeset 4:3b50c1d0d1e5
Uploaded
| author | bgruening |
|---|---|
| date | Thu, 25 Apr 2013 11:05:09 -0400 |
| parents | deccc074dbfb |
| children | c47aa5418943 |
| files | osra.py tool_dependencies.xml |
| diffstat | 2 files changed, 18 insertions(+), 5 deletions(-) [+] |
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--- a/osra.py Fri Apr 12 18:14:31 2013 -0400 +++ b/osra.py Thu Apr 25 11:05:09 2013 -0400 @@ -5,7 +5,8 @@ """ OSRA_DATA_FILES is set during the toolshed Installation - if it is not set, use the standard configuration of OSRA and hope the best. + If it is not set, use the standard configuration of OSRA. + That means we need to delete argument 4-7. That script is a hack, because we do not know the content of OSRA_DATA_FILES at xml evaluation time. osra -f $oformat $infile
--- a/tool_dependencies.xml Fri Apr 12 18:14:31 2013 -0400 +++ b/tool_dependencies.xml Thu Apr 25 11:05:09 2013 -0400 @@ -1,8 +1,20 @@ <tool_dependency> + <package name="openbabel" version="2.3.2"> + <repository toolshed="http://testtoolshed.g2.bx.psu.edu/" name="package_openbabel_2_3" owner="bgruening" changeset_revision="6fd6b904eeff" prior_installation_required="True" /> + </package> <package name="osra" version="1.4.0"> <install version="1.0"> <actions> + <!-- first action is always downloading --> <action type="download_by_url">http://downloads.sourceforge.net/project/osra/osra/1.4.0/osra-1.4.0.tgz</action> + + <!-- populate the environment variables from the dependend repos --> + <action type="set_environment_for_install"> + <repository toolshed="http://testtoolshed.g2.bx.psu.edu/" name="package_openbabel_2_3" owner="bgruening" changeset_revision="6fd6b904eeff"> + <package name="openbabel" version="2.3.2" /> + </repository> + </action> + <!--compiling GraphicsMagick-1.3.18 --> <action type="shell_command">wget http://sourceforge.net/projects/graphicsmagick/files/graphicsmagick/1.3.18/GraphicsMagick-1.3.18.tar.gz</action> <action type="shell_command">tar xfvz GraphicsMagick-1.3.18.tar.gz && cd GraphicsMagick-1.3.18 && ./configure --prefix=$INSTALL_DIR/gmagick/build --enable-shared=yes && make && make install</action> @@ -24,10 +36,10 @@ <action type="shell_command">wget http://mirror.checkdomain.de/gnu/ocrad/ocrad-0.21.tar.gz</action> <action type="shell_command">tar xfvz ocrad-0.21.tar.gz && cd ocrad-0.21 && ./configure --prefix=$INSTALL_DIR/ocrad/build && make && make install</action> - <!--compiling openbabel 2.3.2 --> + <!--compiling openbabel 2.3.2 <action type="shell_command">wget http://downloads.sourceforge.net/project/openbabel/openbabel/2.3.2/openbabel-2.3.2.tar.gz</action> <action type="shell_command">tar xfvz openbabel-2.3.2.tar.gz && cd openbabel-2.3.2 && cmake . -DCMAKE_INSTALL_PREFIX=$INSTALL_DIR/openbabel/build && make && make install</action> - + --> <!--compiling cuneiform 1.1.0 --> <action type="shell_command">wget https://launchpad.net/cuneiform-linux/1.1/1.1/+download/cuneiform-linux-1.1.0.tar.bz2</action> <action type="shell_command">tar xfvj cuneiform-linux-1.1.0.tar.bz2 && cd cuneiform-linux-1.1.0 && mkdir build && cd build && cmake .. -DCMAKE_INSTALL_PREFIX=$INSTALL_DIR/cuneiform/build/ && make && make install</action> @@ -37,12 +49,12 @@ <action type="shell_command">wget http://share.gruenings.eu/osra-1.4.0-configure.patch</action> <action type="shell_command">patch configure < osra-1.4.0-configure.patch</action> <!-- Extending the PATH is needed for OSRA --> - <action type="shell_command">export PATH=$PATH:$INSTALL_DIR/gmagick/build/bin/ && ./configure --with-tclap-include=$INSTALL_DIR/tclap/build/include/ --with-potrace-include=$INSTALL_DIR/potrace/build/include/ --with-potrace-lib=$INSTALL_DIR/potrace/build/lib/ --with-gocr-include=$INSTALL_DIR/gocr/build/include/gocr/ --with-gocr-lib=$INSTALL_DIR/gocr/build/lib/ --with-ocrad-include=$INSTALL_DIR/ocrad/build/include/ --with-ocrad-lib=$INSTALL_DIR/ocrad/build/lib/ --with-cuneiform-include=$INSTALL_DIR/cuneiform/build/install/include/ --with-cuneiform --with-cuneiform-lib=$INSTALL_DIR/cuneiform/build/install/lib/ --with-openbabel-include=$INSTALL_DIR/openbabel/build/include/openbabel-2.0/ --with-openbabel-lib=$INSTALL_DIR/openbabel/build/lib/ --with-graphicsmagick-lib=$INSTALL_DIR/gmagick/build/lib/ --with-graphicsmagick-include=$INSTALL_DIR/gmagick/build/include/GraphicsMagick/ --prefix=$INSTALL_DIR </action> + <action type="shell_command">export PATH=$PATH:$INSTALL_DIR/gmagick/build/bin/ && ./configure --with-tclap-include=$INSTALL_DIR/tclap/build/include/ --with-potrace-include=$INSTALL_DIR/potrace/build/include/ --with-potrace-lib=$INSTALL_DIR/potrace/build/lib/ --with-gocr-include=$INSTALL_DIR/gocr/build/include/gocr/ --with-gocr-lib=$INSTALL_DIR/gocr/build/lib/ --with-ocrad-include=$INSTALL_DIR/ocrad/build/include/ --with-ocrad-lib=$INSTALL_DIR/ocrad/build/lib/ --with-cuneiform-include=$INSTALL_DIR/cuneiform/build/install/include/ --with-cuneiform --with-cuneiform-lib=$INSTALL_DIR/cuneiform/build/install/lib/ --with-openbabel-include=$OPENBABEL_INCLUDE_DIR/openbabel-2.0/ --with-openbabel-lib=$OPENBABEL_LIB_DIR --with-graphicsmagick-lib=$INSTALL_DIR/gmagick/build/lib/ --with-graphicsmagick-include=$INSTALL_DIR/gmagick/build/include/GraphicsMagick/ --prefix=$INSTALL_DIR </action> <action type="shell_command">make</action> <action type="shell_command">make install</action> <action type="shell_command">rm $INSTALL_DIR/tclap/ -r</action> - <action type="shell_command">rm $INSTALL_DIR/openbabel/ -r</action> + <!--<action type="shell_command">rm $INSTALL_DIR/openbabel/ -r</action>--> <action type="shell_command">rm $INSTALL_DIR/gocr/ -r</action> <action type="shell_command">rm $INSTALL_DIR/ocrad/ -r</action> <action type="shell_command">rm $INSTALL_DIR/cuneiform/ -r</action>