view tool_dependencies.xml @ 3:deccc074dbfb

Uploaded

<tool_dependency>
    <package name="osra" version="1.4.0">
        <install version="1.0">
            <actions>
                <action type="download_by_url">http://downloads.sourceforge.net/project/osra/osra/1.4.0/osra-1.4.0.tgz</action>
                <!--compiling GraphicsMagick-1.3.18 -->
                <action type="shell_command">wget http://sourceforge.net/projects/graphicsmagick/files/graphicsmagick/1.3.18/GraphicsMagick-1.3.18.tar.gz</action>
                <action type="shell_command">tar xfvz GraphicsMagick-1.3.18.tar.gz &amp;&amp; cd GraphicsMagick-1.3.18 &amp;&amp; ./configure --prefix=$INSTALL_DIR/gmagick/build --enable-shared=yes &amp;&amp; make &amp;&amp; make install</action>

                <!--compiling potrace-1.11 -->
                <action type="shell_command">wget http://potrace.sourceforge.net/download/potrace-1.11.tar.gz</action>
                <action type="shell_command">tar xfvz potrace-1.11.tar.gz &amp;&amp; cd potrace-1.11 &amp;&amp; ./configure --with-libpotrace --prefix=$INSTALL_DIR/potrace/build &amp;&amp; make &amp;&amp; make install</action>

                <!--compiling gocr 0.50patched -->
                <action type="shell_command">wget http://downloads.sourceforge.net/project/osra/gocr-patched/gocr-0.50pre-patched.tgz</action>
                <action type="shell_command">tar xfvz gocr-0.50pre-patched.tgz &amp;&amp; cd gocr-0.50pre-patched &amp;&amp; ./configure --prefix=$INSTALL_DIR/gocr/build &amp;&amp; make libs &amp;&amp; make all install</action>

                <!--compiling tclap 1.2.1 -->
                <action type="shell_command">wget http://downloads.sourceforge.net/project/tclap/tclap-1.2.1.tar.gz</action>
                <action type="shell_command">tar xfvz tclap-1.2.1.tar.gz &amp;&amp; cd tclap-1.2.1 &amp;&amp; ./configure --prefix=$INSTALL_DIR/tclap/build &amp;&amp; make &amp;&amp; make install</action>


                <!--compiling ocrad 0.21 -->
                <action type="shell_command">wget http://mirror.checkdomain.de/gnu/ocrad/ocrad-0.21.tar.gz</action>
                <action type="shell_command">tar xfvz ocrad-0.21.tar.gz &amp;&amp; cd ocrad-0.21 &amp;&amp; ./configure --prefix=$INSTALL_DIR/ocrad/build &amp;&amp; make &amp;&amp; make install</action>

                <!--compiling openbabel 2.3.2 -->
                <action type="shell_command">wget http://downloads.sourceforge.net/project/openbabel/openbabel/2.3.2/openbabel-2.3.2.tar.gz</action>
                <action type="shell_command">tar xfvz openbabel-2.3.2.tar.gz &amp;&amp; cd openbabel-2.3.2 &amp;&amp; cmake . -DCMAKE_INSTALL_PREFIX=$INSTALL_DIR/openbabel/build &amp;&amp; make &amp;&amp; make install</action>

                <!--compiling cuneiform 1.1.0 -->
                <action type="shell_command">wget https://launchpad.net/cuneiform-linux/1.1/1.1/+download/cuneiform-linux-1.1.0.tar.bz2</action>
                <action type="shell_command">tar xfvj cuneiform-linux-1.1.0.tar.bz2 &amp;&amp; cd cuneiform-linux-1.1.0 &amp;&amp; mkdir build &amp;&amp; cd build &amp;&amp; cmake .. -DCMAKE_INSTALL_PREFIX=$INSTALL_DIR/cuneiform/build/ &amp;&amp; make &amp;&amp; make install</action>

                <!--And finally OSRA 1.4.0-->
                <!--<action type="download_by_url">http://downloads.sourceforge.net/project/osra/osra/1.4.0/osra-1.4.0.tgz</action>-->
                <action type="shell_command">wget http://share.gruenings.eu/osra-1.4.0-configure.patch</action>
                <action type="shell_command">patch configure &lt; osra-1.4.0-configure.patch</action>
                <!-- Extending the PATH is needed for OSRA -->
                <action type="shell_command">export PATH=$PATH:$INSTALL_DIR/gmagick/build/bin/ &amp;&amp; ./configure --with-tclap-include=$INSTALL_DIR/tclap/build/include/ --with-potrace-include=$INSTALL_DIR/potrace/build/include/ --with-potrace-lib=$INSTALL_DIR/potrace/build/lib/ --with-gocr-include=$INSTALL_DIR/gocr/build/include/gocr/ --with-gocr-lib=$INSTALL_DIR/gocr/build/lib/ --with-ocrad-include=$INSTALL_DIR/ocrad/build/include/ --with-ocrad-lib=$INSTALL_DIR/ocrad/build/lib/ --with-cuneiform-include=$INSTALL_DIR/cuneiform/build/install/include/ --with-cuneiform --with-cuneiform-lib=$INSTALL_DIR/cuneiform/build/install/lib/ --with-openbabel-include=$INSTALL_DIR/openbabel/build/include/openbabel-2.0/ --with-openbabel-lib=$INSTALL_DIR/openbabel/build/lib/ --with-graphicsmagick-lib=$INSTALL_DIR/gmagick/build/lib/ --with-graphicsmagick-include=$INSTALL_DIR/gmagick/build/include/GraphicsMagick/ --prefix=$INSTALL_DIR </action>
                <action type="shell_command">make</action>
                <action type="shell_command">make install</action>

                <action type="shell_command">rm $INSTALL_DIR/tclap/ -r</action>
                <action type="shell_command">rm $INSTALL_DIR/openbabel/ -r</action>
                <action type="shell_command">rm $INSTALL_DIR/gocr/ -r</action>
                <action type="shell_command">rm $INSTALL_DIR/ocrad/ -r</action>
                <action type="shell_command">rm $INSTALL_DIR/cuneiform/ -r</action>

                <action type="set_environment">
                    <environment_variable name="LD_LIBRARY_PATH" action="prepend_to">$INSTALL_DIR/gmagick/build/lib/</environment_variable>
                    <environment_variable name="LD_LIBRARY_PATH" action="prepend_to">$INSTALL_DIR/potrace/build/lib/</environment_variable>
                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
                    <!-- OSRA_DATA_FILES is only used by the galaxy wrapper and is not part of OSRA -->
                    <environment_variable name="OSRA_DATA_FILES" action="set_to">$INSTALL_DIR/share</environment_variable>
                </action>
            </actions>
        </install>
        <readme>We still have a handfull of requirements</readme>
    </package>
</tool_dependency>