diff osra.xml @ 3:deccc074dbfb

Uploaded

--- a/osra.xml	Fri Apr 12 16:25:32 2013 -0400
+++ b/osra.xml	Fri Apr 12 18:14:31 2013 -0400
@@ -1,16 +1,17 @@
 <tool id="osra" name="Molecule recognition" version="0.2">
-    <description>in Images or PDF documents</description>
+    <description>in Images or PDF documents (OSRA)</description>
     <requirements>
         <requirement type="package" version="1.4.0">osra</requirement>
     </requirements>
-    <command>
+    <command interpreter='python'>
         ## OSRA_DATA_FILES is set during the toolshed Installation
         ## if it is not set, use the standard configuration and hope the best
-        osra -f $oformat $infile 
-        #import os
-        #if os.environ.get('OSRA_DATA_FILES', None):
-            -l \$OSRA_DATA_FILES/spelling.txt -a \$OSRA_DATA_FILES/superatom.txt
-        #end if
+        osra.py -f $oformat $infile 
+        -l \$OSRA_DATA_FILES/spelling.txt -a \$OSRA_DATA_FILES/superatom.txt
+        
+        ## further additions of OSRA parameter should go after -l and -a
+        ## because -l and -a can be removed by the python wrapper
+        
         > $outfile
     </command>
     <inputs>