# HG changeset patch
# User Bjoern Gruening <bjoern.gruening@gmail.com>
# Date 1374244136 -7200
# Node ID 96e5c3da1870a3c39048f0a8bab9aa97a5eac826
# Parent  12640f433fd79e7c544fafd2a9c4a00ff2e660eb
ChemicalToolBoX update.

diff -r 12640f433fd7 -r 96e5c3da1870 force_pre-commit_hook_temp_file
diff -r 12640f433fd7 -r 96e5c3da1870 opsin.xml
--- a/opsin.xml	Mon May 27 17:00:18 2013 +0200
+++ b/opsin.xml	Fri Jul 19 16:28:56 2013 +0200
@@ -4,7 +4,7 @@
     <requirements>
         <requirement type="package" version="1.4.0">opsin</requirement>
     </requirements>
-    <command>java -jar \$JAVA_JAR_PATH/opsin-1.4.0-jar-with-dependencies.jar ${radicals} "${wildcards}" -o$oformat &lt; "${infile}" &gt; "${outfile}" </command>
+    <command>java -jar \$JAVA_JAR_PATH/opsin-1.4.0-jar-with-dependencies.jar "${radicals}" "${wildcards}" -o$oformat &lt; "${infile}" &gt; "${outfile}" </command>
     <stdio>
         <exit_code range="1:" />
         <exit_code range=":-1" />
@@ -39,22 +39,24 @@
     <help>
 
 
-**What it is**
+.. class:: infomark
+
+**What this tool does**
 
-OPSIN_ [1] is a IUPAC name-to-structure conversion tool offering high recall and precision on organic chemical nomenclature.
+OPSIN_ is a IUPAC name-to-structure conversion tool offering high recall and precision on organic chemical nomenclature.
 
-.. _Opsin: https://bitbucket.org/dan2097/opsin/overview
+.. _OPSIN: https://bitbucket.org/dan2097/opsin/overview
 
 -----
 
+.. class:: infomark
     
 **Cite**
 
-[1] Chemical Name to Structure: OPSIN, an Open Source Solution
-Daniel M. Lowe, Peter T. Corbett, Peter Murray-Rust, Robert C. Glen
-Journal of Chemical Information and Modeling 2011 51 (3), 739-753
+Daniel M Lowe, Peter T Corbett, Peter Murray-Rust, Robert C Glen - `Chemical Name to Structure: OPSIN, an Open Source Solution`_
 
-http://dx.doi.org/10.1021/ci100384d
+.. _`Chemical Name to Structure: OPSIN, an Open Source Solution`: http://dx.doi.org/10.1021/ci100384d
+
 
     </help>
 </tool>