view SpectraFilterBernNorm.xml @ 3:ec62782f6c68 draft

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<?xml version='1.0' encoding='UTF-8'?>
<tool id="SpectraFilterBernNorm" name="SpectraFilterBernNorm" version="1.12.0">
  <description>Applies thresholdfilter to peak spectra.</description>
  <macros>
    <token name="@EXECUTABLE@">SpectraFilterBernNorm</token>
    <import>macros.xml</import>
  </macros>
  <expand macro="stdio"/>
  <expand macro="requirements"/>
  <command>SpectraFilterBernNorm

-in ${param_in}
-out ${param_out}
-threads \${GALAXY_SLOTS:-24} 
-algorithm:threshold ${param_threshold}
#if $adv_opts.adv_opts_selector=='advanced':
    -algorithm:C1 ${adv_opts.param_C1}
    -algorithm:C2 ${adv_opts.param_C2}
#end if
</command>
  <inputs>
    <param name="param_in" type="data" format="mzML" optional="False" label="input file " help="(-in)"/>
    <param name="param_threshold" type="float" value="0.1" label="Threshold of the Bern et al. normalization." help="(-threshold)"/>
    <expand macro="advanced_options">
      <param name="param_C1" type="float" value="28.0" label="C1 value of the normalization." help="(-C1)"/>
      <param name="param_C2" type="float" value="400.0" label="C2 value of the normalization." help="(-C2)"/>
    </expand>
  </inputs>
  <outputs>
    <data name="param_out" label="output file " format="mzML"/>
  </outputs>
  <help>**What it does**

Applies thresholdfilter to peak spectra.


For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_SpectraFilterBernNorm.html

@REFERENCES@
</help>
</tool>