view SeedListGenerator.xml @ 3:ec62782f6c68 draft

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<?xml version='1.0' encoding='UTF-8'?>
<tool id="SeedListGenerator" name="SeedListGenerator" version="1.12.0">
  <description>Generates seed lists for feature detection.</description>
  <macros>
    <token name="@EXECUTABLE@">SeedListGenerator</token>
    <import>macros.xml</import>
  </macros>
  <expand macro="stdio"/>
  <expand macro="requirements"/>
  <command>SeedListGenerator

-in ${param_in}
-out ${param_out}
${param_use_peptide_mass}
-threads \${GALAXY_SLOTS:-24} 
</command>
  <inputs>
    <param name="param_in" type="data" format="mzML,idXML,featureXML,consensusXML" optional="False" label="Input file (see below for details)" help="(-in)"/>
    <param name="param_use_peptide_mass" type="boolean" truevalue="-use_peptide_mass true" falsevalue="-use_peptide_mass false" checked="false" optional="True" label="[idXML input only] Use the monoisotopic mass of the best peptide hit for the m/z position (default: use precursor m/z)" help="(-use_peptide_mass)"/>
  </inputs>
  <outputs>
    <data name="param_out" label="Output file(s)" format="featureXML"/>
  </outputs>
  <help>**What it does**

Generates seed lists for feature detection.


For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_SeedListGenerator.html

@REFERENCES@
</help>
</tool>