view QCShrinker.xml @ 3:ec62782f6c68 draft

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<?xml version='1.0' encoding='UTF-8'?>
<tool id="QCShrinker" name="QCShrinker" version="1.12.0">
  <description>This application is used to remove the verbose table attachments from a qcml file that are not needed anymore, e.g. for a final report.</description>
  <macros>
    <token name="@EXECUTABLE@">QCShrinker</token>
    <import>macros.xml</import>
  </macros>
  <expand macro="stdio"/>
  <expand macro="requirements"/>
  <command>QCShrinker

-in ${param_in}
-qp_accessions ${param_qp_accessions}
-name ${param_name}
-run ${param_run}
-out ${param_out}
-threads \${GALAXY_SLOTS:-24} 
</command>
  <inputs>
    <param name="param_in" type="data" format="" optional="False" label="Input qcml file" help="(-in)"/>
    <param name="param_qp_accessions" type="text" size="20" label="A list of cv accessions that should be removed. If empty, the usual suspects will be removed!" help="(-qp_accessions)"/>
    <param name="param_name" type="text" size="20" label="The name of the target run or set that contains the requested quality parameter." help="(-name)"/>
    <param name="param_run" type="data" format="mzML" optional="True" label="The file from which the name of the target run that contains the requested quality parameter is taken. This overrides the name parameter!" help="(-run)"/>
  </inputs>
  <outputs>
    <data name="param_out" label="Output extended/reduced qcML file" format="data"/>
  </outputs>
  <help>**What it does**

This application is used to remove the verbose table attachments from a qcml file that are not needed anymore, e.g. for a final report.


For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/UTILS_QCShrinker.html

@REFERENCES@
</help>
</tool>