view QCExtractor.xml @ 3:ec62782f6c68 draft

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<?xml version='1.0' encoding='UTF-8'?>
<tool id="QCExtractor" name="QCExtractor" version="1.12.0">
  <description>Extracts a table attachment to a given qc parameter.</description>
  <macros>
    <token name="@EXECUTABLE@">QCExtractor</token>
    <import>macros.xml</import>
  </macros>
  <expand macro="stdio"/>
  <expand macro="requirements"/>
  <command>QCExtractor

-in ${param_in}
-qp ${param_qp}
-run ${param_run}
-name ${param_name}
-out_csv ${param_out_csv}
-threads \${GALAXY_SLOTS:-24} 
</command>
  <inputs>
    <param name="param_in" type="data" format="" optional="False" label="Input qcml file" help="(-in)"/>
    <param name="param_qp" type="text" size="20" label="Target attachment qp." help="(-qp)"/>
    <param name="param_run" type="data" format="mzML" optional="True" label="The file that defined the run under which the qp for the attachment is aggregated as mzML file. The file is only used to extract the run name from the file name." help="(-run)"/>
    <param name="param_name" type="text" size="20" label="If no file for the run was given (or if the target qp is contained in a set), at least a name of the target run/set containing the the qp for the attachment has to be given." help="(-name)"/>
  </inputs>
  <outputs>
    <data name="param_out_csv" label="Output csv formatted table." format="tabular"/>
  </outputs>
  <help>**What it does**

Extracts a table attachment to a given qc parameter.


For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/UTILS_QCExtractor.html

@REFERENCES@
</help>
</tool>