view QCEmbedder.xml @ 3:ec62782f6c68 draft

Uploaded

<?xml version='1.0' encoding='UTF-8'?>
<tool id="QCEmbedder" name="QCEmbedder" version="1.12.0">
  <description>Attaches a table or an image to a given qc parameter.</description>
  <macros>
    <token name="@EXECUTABLE@">QCEmbedder</token>
    <import>macros.xml</import>
  </macros>
  <expand macro="stdio"/>
  <expand macro="requirements"/>
  <command>QCEmbedder

-in ${param_in}
-qp_att_acc ${param_qp_att_acc}
-cv_acc ${param_cv_acc}
-run ${param_run}
-name ${param_name}
-plot ${param_plot}
-table ${param_table}
-out ${param_out}
-threads \${GALAXY_SLOTS:-24} 
</command>
  <inputs>
    <param name="param_in" type="data" format="" optional="True" label="Input qcml file" help="(-in)"/>
    <param name="param_qp_att_acc" type="text" size="20" label="Defines the qp cv accession of the qp to which the table/image is attached." help="(-qp_att_acc)"/>
    <param name="param_cv_acc" type="text" size="20" label="Defines the cv accession of the attachment." help="(-cv_acc)"/>
    <param name="param_run" type="data" format="mzML" optional="True" label="The file that defined the run under which the qp for the attachment is aggregated as mzML file. The file is only used to extract the run name from the file name." help="(-run)"/>
    <param name="param_name" type="text" size="20" label="If no file for the run was given (or if the target qp is contained in a set), at least a name of the target run/set containing the the qp for the attachment has to be given." help="(-name)"/>
    <param name="param_plot" type="data" format="" optional="True" label="If a plot image is to be attached to a qp, this has to be specified here." help="(-plot)"/>
    <param name="param_table" type="data" format="tabular" optional="True" label="If a table is to be attached to a qp, this has to be specified here." help="(-table)"/>
  </inputs>
  <outputs>
    <data name="param_out" label="Output extended qcML file" format="data"/>
  </outputs>
  <help>**What it does**

Attaches a table or an image to a given qc parameter.


For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/UTILS_QCEmbedder.html

@REFERENCES@
</help>
</tool>