view IDRipper.xml @ 3:ec62782f6c68 draft

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<?xml version='1.0' encoding='UTF-8'?>
<tool id="IDRipper" name="IDRipper" version="1.12.0">
  <description>Split protein/peptide identification file into several files according annotated file origin.</description>
  <macros>
    <token name="@EXECUTABLE@">IDRipper</token>
    <import>macros.xml</import>
  </macros>
  <expand macro="stdio"/>
  <expand macro="requirements"/>
  <command>IDRipper

-in ${param_in}
-out ${param_out}
-out_path ${param_out_path}
-threads \${GALAXY_SLOTS:-24} 
</command>
  <inputs>
    <param name="param_in" type="data" format="idXML" optional="False" label="idXML-file, whereas the protein/peptide identifications must be tagged with file_origin" help="(-in)"/>
    <param name="param_out_path" type="text" size="20" label="Directory for the idXML-files after ripping according file_origin tag. If out_path is set, out is ignored." help="(-out_path)"/>
  </inputs>
  <outputs>
    <data name="param_out" label="The path to the file is used as the output directory." format="idXML"/>
  </outputs>
  <help>**What it does**

Split protein/peptide identification file into several files according annotated file origin.


For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_IDRipper.html

@REFERENCES@
</help>
</tool>