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<?xml version='1.0' encoding='UTF-8'?>
<tool id="IDRTCalibration" name="IDRTCalibration" version="1.12.0">
  <description>Can be used to calibrate RTs of peptide hits linearly to standards.</description>
  <macros>
    <token name="@EXECUTABLE@">IDRTCalibration</token>
    <import>macros.xml</import>
  </macros>
  <expand macro="stdio"/>
  <expand macro="requirements"/>
  <command>IDRTCalibration

-in ${param_in}
-out ${param_out}
-calibrant_1_reference ${param_calibrant_1_reference}
-calibrant_2_reference ${param_calibrant_2_reference}
-calibrant_1_input ${param_calibrant_1_input}
-calibrant_2_input ${param_calibrant_2_input}
-threads \${GALAXY_SLOTS:-24} 
</command>
  <inputs>
    <param name="param_in" type="data" format="idXML" optional="False" label="input file " help="(-in)"/>
    <param name="param_calibrant_1_reference" type="float" value="0.1" label="The RT of the first calibrant in the reference file." help="(-calibrant_1_reference)"/>
    <param name="param_calibrant_2_reference" type="float" value="0.9" label="The RT of the second calibrant in the reference file." help="(-calibrant_2_reference)"/>
    <param name="param_calibrant_1_input" type="float" value="-1.0" label="The RT of the first calibrant in the input file. Please note that this value needs to be set. The default value -1.0 is not allowed." help="(-calibrant_1_input)"/>
    <param name="param_calibrant_2_input" type="float" value="-1.0" label="The RT of the second calibrant in the input file. Please note that this value needs to be set. The default value -1.0 is not allowed." help="(-calibrant_2_input)"/>
  </inputs>
  <outputs>
    <data name="param_out" label="output file " format="idXML"/>
  </outputs>
  <help>**What it does**

Can be used to calibrate RTs of peptide hits linearly to standards.


For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_IDRTCalibration.html

@REFERENCES@
</help>
</tool>