view ExecutePipeline.xml @ 3:ec62782f6c68 draft

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<?xml version='1.0' encoding='UTF-8'?>
<tool id="ExecutePipeline" name="ExecutePipeline" version="1.12.0">
  <description>Executes workflows created by TOPPAS.</description>
  <macros>
    <token name="@EXECUTABLE@">ExecutePipeline</token>
    <import>macros.xml</import>
  </macros>
  <expand macro="stdio"/>
  <expand macro="requirements"/>
  <command>ExecutePipeline

-in ${param_in}
-out_dir ${param_out_dir}
-resource_file ${param_resource_file}
-num_jobs ${param_num_jobs}
-threads \${GALAXY_SLOTS:-24} 
</command>
  <inputs>
    <param name="param_in" type="data" format="" optional="False" label="The workflow to be executed." help="(-in)"/>
    <param name="param_out_dir" type="text" size="20" label="Directory for output files (default: user's home directory)" help="(-out_dir)"/>
    <param name="param_resource_file" type="text" size="20" label="A TOPPAS resource file (*.trf) specifying the files this workflow is to be applied to" help="(-resource_file)"/>
    <param name="param_num_jobs" type="integer" min="1" optional="True" value="1" label="Maximum number of jobs running in parallel" help="(-num_jobs)"/>
  </inputs>
  <outputs/>
  <help>**What it does**

Executes workflows created by TOPPAS.


For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_ExecutePipeline.html

@REFERENCES@
</help>
</tool>