Mercurial > repos > bgruening > openms
diff SpectraFilterNLargest.xml @ 4:6ead64a594bd draft default tip
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/openms commit 7a5239910fda9ed90cca286a38855703b40b1b56-dirty
author | bgruening |
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date | Wed, 27 Jan 2016 10:06:49 -0500 |
parents | 3d84209d3178 |
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--- a/SpectraFilterNLargest.xml Mon Oct 13 10:18:22 2014 -0400 +++ b/SpectraFilterNLargest.xml Wed Jan 27 10:06:49 2016 -0500 @@ -1,33 +1,45 @@ -<?xml version='1.0' encoding='UTF-8'?> -<tool id="SpectraFilterNLargest" name="SpectraFilterNLargest" version="1.12.0"> - <description>Applies thresholdfilter to peak spectra.</description> - <macros> - <token name="@EXECUTABLE@">SpectraFilterNLargest</token> - <import>macros.xml</import> - </macros> - <expand macro="stdio"/> - <expand macro="requirements"/> - <command>SpectraFilterNLargest +<?xml version="1.0" encoding="UTF-8"?> + <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.--> + <!--Proposed Tool Section: [Identification]--> + <tool id="SpectraFilterNLargest" name="SpectraFilterNLargest" version="2.0.0"> + <description>Applies thresholdfilter to peak spectra.</description> + <macros> + <token name="@EXECUTABLE@">SpectraFilterNLargest</token> + <import>macros.xml</import> + </macros> + <expand macro="references"/> + <expand macro="stdio"/> + <expand macro="requirements"/> + <command>SpectraFilterNLargest --in ${param_in} --out ${param_out} --threads \${GALAXY_SLOTS:-24} --algorithm:n ${param_n} +#if $param_in: + -in $param_in +#end if +#if $param_out: + -out $param_out +#end if +-threads \${GALAXY_SLOTS:-24} +#if $param_algorithm_n: + -algorithm:n $param_algorithm_n +#end if +#if $adv_opts.adv_opts_selector=='advanced': + #if $adv_opts.param_force: + -force +#end if +#end if </command> - <inputs> - <param name="param_in" type="data" format="mzML" optional="False" label="input file " help="(-in)"/> - <param name="param_n" type="integer" value="200" label="The number of peaks to keep" help="(-n)"/> - </inputs> - <outputs> - <data name="param_out" label="output file " format="mzML"/> - </outputs> - <help>**What it does** - -Applies thresholdfilter to peak spectra. + <inputs> + <param format="mzml" help="(-in) " label="input file" name="param_in" optional="False" type="data"/> + <param help="(-n) " label="The number of peaks to keep" name="param_algorithm_n" type="integer" value="200"/> + <expand macro="advanced_options"> + <param checked="false" falsevalue="" help="(-force) " label="Overwrite tool specific checks" name="param_force" optional="True" truevalue="-force" type="boolean"/> + </expand> + </inputs> + <outputs> + <data format="mzml" name="param_out"/> + </outputs> + <help>Applies thresholdfilter to peak spectra. -For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_SpectraFilterNLargest.html - -@REFERENCES@ -</help> -</tool> +For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_SpectraFilterNLargest.html</help> + </tool>