diff IDRipper.xml @ 0:3d84209d3178 draft

Uploaded

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/IDRipper.xml	Fri Oct 10 18:20:03 2014 -0400
@@ -0,0 +1,33 @@
+<?xml version='1.0' encoding='UTF-8'?>
+<tool id="IDRipper" name="IDRipper" version="1.12.0">
+  <description>Split protein/peptide identification file into several files according annotated file origin.</description>
+  <macros>
+    <token name="@EXECUTABLE@">IDRipper</token>
+    <import>macros.xml</import>
+  </macros>
+  <expand macro="stdio"/>
+  <expand macro="requirements"/>
+  <command>IDRipper
+
+-in ${param_in}
+-out ${param_out}
+-out_path ${param_out_path}
+-threads \${GALAXY_SLOTS:-24} 
+</command>
+  <inputs>
+    <param name="param_in" type="data" format="idXML" optional="False" label="idXML-file, whereas the protein/peptide identifications must be tagged with file_origin" help="(-in)"/>
+    <param name="param_out_path" type="text" size="20" label="Directory for the idXML-files after ripping according file_origin tag. If out_path is set, out is ignored." help="(-out_path)"/>
+  </inputs>
+  <outputs>
+    <data name="param_out" label="The path to the file is used as the output directory." format="idXML"/>
+  </outputs>
+  <help>**What it does**
+
+Split protein/peptide identification file into several files according annotated file origin.
+
+
+For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_IDRipper.html
+
+@REFERENCES@
+</help>
+</tool>