diff FuzzyDiff.xml @ 0:3d84209d3178 draft

Uploaded

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/FuzzyDiff.xml	Fri Oct 10 18:20:03 2014 -0400
@@ -0,0 +1,46 @@
+<?xml version='1.0' encoding='UTF-8'?>
+<tool id="FuzzyDiff" name="FuzzyDiff" version="1.12.0">
+  <description>Compares two files, tolerating numeric differences.</description>
+  <macros>
+    <token name="@EXECUTABLE@">FuzzyDiff</token>
+    <import>macros.xml</import>
+  </macros>
+  <expand macro="stdio"/>
+  <expand macro="requirements"/>
+  <command>FuzzyDiff
+
+-in1 ${param_in1}
+-in2 ${param_in2}
+-ratio ${param_ratio}
+-absdiff ${param_absdiff}
+-verbose ${param_verbose}
+-tab_width ${param_tab_width}
+-first_column ${param_first_column}
+-threads \${GALAXY_SLOTS:-24} 
+#if $adv_opts.adv_opts_selector=='advanced':
+    -whitelist ${adv_opts.param_whitelist}
+#end if
+</command>
+  <inputs>
+    <param name="param_in1" type="data" format="data" label="first input file" help="(-in1)"/>
+    <param name="param_in2" type="data" format="data" label="second input file" help="(-in2)"/>
+    <param name="param_ratio" type="float" min="1.0" optional="True" value="1.0" label="acceptable relative error. Only one of 'ratio' or 'absdiff' has to be satisfied.  Use &quot;absdiff&quot; to deal with cases like &quot;zero vs. epsilon&quot;." help="(-ratio)"/>
+    <param name="param_absdiff" type="float" min="0.0" optional="True" value="0.0" label="acceptable absolute difference. Only one of 'ratio' or 'absdiff' has to be satisfied. " help="(-absdiff)"/>
+    <param name="param_verbose" type="integer" min="0" max="3" optional="True" value="2" label="set verbose level:#br#0 = very quiet mode (absolutely no output)#br#1 = quiet mode (no output unless differences detected)#br#2 = default (include summary at end)#br#3 = continue after errors#br#" help="(-verbose)"/>
+    <param name="param_tab_width" type="integer" min="1" optional="True" value="8" label="tabulator width, used for calculation of column numbers" help="(-tab_width)"/>
+    <param name="param_first_column" type="integer" min="0" optional="True" value="1" label="number of first column, used for calculation of column numbers" help="(-first_column)"/>
+    <expand macro="advanced_options">
+      <param name="param_whitelist" type="text" size="20" value="&lt;?xml-stylesheet" label="Lines containing one of these strings are skipped" help="(-whitelist)"/>
+    </expand>
+  </inputs>
+  <outputs/>
+  <help>**What it does**
+
+Compares two files, tolerating numeric differences.
+
+
+For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/UTILS_FuzzyDiff.html
+
+@REFERENCES@
+</help>
+</tool>