comparison SpectraFilterNormalizer.xml @ 0:3d84209d3178 draft

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0:3d84209d3178

<?xml version='1.0' encoding='UTF-8'?>
<tool id="SpectraFilterNormalizer" name="SpectraFilterNormalizer" version="1.12.0">
  <description>Applies thresholdfilter to peak spectra.</description>
  <macros>
    <token name="@EXECUTABLE@">SpectraFilterNormalizer</token>
    <import>macros.xml</import>
  </macros>
  <expand macro="stdio"/>
  <expand macro="requirements"/>
  <command>SpectraFilterNormalizer

-in ${param_in}
-out ${param_out}
-threads \${GALAXY_SLOTS:-24} 
-algorithm:method ${param_method}
</command>
  <inputs>
    <param name="param_in" type="data" format="mzML" optional="False" label="input file " help="(-in)"/>
    <param name="param_method" type="select" optional="True" value="to_one" label="Normalize by deviding though the TIC ('to_TIC') or normalize to max intensity of one ('to_one')." help="(-method)">
      <option value="to_one">to_one</option>
      <option value="to_TIC">to_TIC</option>
    </param>
  </inputs>
  <outputs>
    <data name="param_out" label="output file " format="mzML"/>
  </outputs>
  <help>**What it does**

Applies thresholdfilter to peak spectra.


For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_SpectraFilterNormalizer.html

@REFERENCES@
</help>
</tool>