comparison ConsensusMapNormalizer.xml @ 0:3d84209d3178 draft

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0:3d84209d3178

<?xml version='1.0' encoding='UTF-8'?>
<tool id="ConsensusMapNormalizer" name="ConsensusMapNormalizer" version="1.12.0">
  <description>Normalizes maps of one consensusXML file</description>
  <macros>
    <token name="@EXECUTABLE@">ConsensusMapNormalizer</token>
    <import>macros.xml</import>
  </macros>
  <expand macro="stdio"/>
  <expand macro="requirements"/>
  <command>ConsensusMapNormalizer

-in ${param_in}
-out ${param_out}
-algorithm_type ${param_algorithm_type}
-ratio_threshold ${param_ratio_threshold}
-threads \${GALAXY_SLOTS:-24} 
</command>
  <inputs>
    <param name="param_in" type="data" format="consensusXML" optional="False" label="input file" help="(-in)"/>
    <param name="param_algorithm_type" type="select" optional="True" value="robust_regression" label="The normalization algorithm that is applied." help="(-algorithm_type)">
      <option value="robust_regression">robust_regression</option>
      <option value="median">median</option>
      <option value="quantile">quantile</option>
    </param>
    <param name="param_ratio_threshold" type="float" min="0.001" max="1.0" optional="True" value="0.67" label="Only for 'robust_regression': the parameter is used to distinguish between non-outliers (ratio_threshold &lt; intensity ratio &lt; 1/ratio_threshold) and outliers." help="(-ratio_threshold)"/>
  </inputs>
  <outputs>
    <data name="param_out" label="output file" format="consensusXML"/>
  </outputs>
  <help>**What it does**

Normalizes maps of one consensusXML file


For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_ConsensusMapNormalizer.html

@REFERENCES@
</help>
</tool>