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1 <?xml version='1.0' encoding='UTF-8'?>
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2 <tool id="OpenSwathDIAPreScoring" name="OpenSwathDIAPreScoring" version="1.12.0">
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3 <description>Scoring spectra using the DIA scores.</description>
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4 <macros>
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5 <token name="@EXECUTABLE@">OpenSwathDIAPreScoring</token>
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6 <import>macros.xml</import>
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7 </macros>
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8 <expand macro="stdio"/>
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9 <expand macro="requirements"/>
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10 <command>OpenSwathDIAPreScoring
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11
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12 -tr ${param_tr}
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13 -out ${param_out}
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14 -swath_files ${param_swath_files}
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15 -min_upper_edge_dist ${param_min_upper_edge_dist}
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16 -threads \${GALAXY_SLOTS:-24}
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17 </command>
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18 <inputs>
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19 <param name="param_tr" type="data" format="" optional="False" label="transition file" help="(-tr)"/>
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20 <param name="param_swath_files" type="data" format="mzML" optional="True" size="20" label="Swath files that were used to extract the transitions. If present, SWATH specific scoring will be applied." help="(-swath_files)"/>
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21 <param name="param_min_upper_edge_dist" type="float" value="0.0" label="Minimal distance to the edge to still consider a precursor, in Thomson (only in SWATH)" help="(-min_upper_edge_dist)"/>
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22 </inputs>
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23 <outputs>
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24 <data name="param_out" label="output file" format="data"/>
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25 </outputs>
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26 <help>**What it does**
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27
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28 Scoring spectra using the DIA scores.
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29
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30
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31 For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_OpenSwathDIAPreScoring.html
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32
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33 @REFERENCES@
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34 </help>
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35 </tool>
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