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1 <?xml version='1.0' encoding='UTF-8'?>
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2 <tool id="ConsensusMapNormalizer" name="ConsensusMapNormalizer" version="1.12.0">
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3 <description>Normalizes maps of one consensusXML file</description>
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4 <macros>
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5 <token name="@EXECUTABLE@">ConsensusMapNormalizer</token>
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6 <import>macros.xml</import>
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7 </macros>
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8 <expand macro="stdio"/>
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9 <expand macro="requirements"/>
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10 <command>ConsensusMapNormalizer
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11
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12 -in ${param_in}
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13 -out ${param_out}
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14 -algorithm_type ${param_algorithm_type}
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15 -ratio_threshold ${param_ratio_threshold}
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16 -threads \${GALAXY_SLOTS:-24}
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17 </command>
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18 <inputs>
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19 <param name="param_in" type="data" format="consensusXML" optional="False" label="input file" help="(-in)"/>
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20 <param name="param_algorithm_type" type="select" optional="True" value="robust_regression" label="The normalization algorithm that is applied." help="(-algorithm_type)">
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21 <option value="robust_regression">robust_regression</option>
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22 <option value="median">median</option>
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23 <option value="quantile">quantile</option>
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24 </param>
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25 <param name="param_ratio_threshold" type="float" min="0.001" max="1.0" optional="True" value="0.67" label="Only for 'robust_regression': the parameter is used to distinguish between non-outliers (ratio_threshold < intensity ratio < 1/ratio_threshold) and outliers." help="(-ratio_threshold)"/>
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26 </inputs>
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27 <outputs>
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28 <data name="param_out" label="output file" format="consensusXML"/>
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29 </outputs>
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30 <help>**What it does**
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31
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32 Normalizes maps of one consensusXML file
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33
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34
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35 For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_ConsensusMapNormalizer.html
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36
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37 @REFERENCES@
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38 </help>
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39 </tool>
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