Mercurial > repos > bgruening > openbabel_remsmall
comparison distance_finder.py @ 12:e72c8211d58a draft
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/chemicaltoolbox/openbabel commit 944ea4bb8a9cd4244152a4a4fecd0485fabc2ad0"
author | bgruening |
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date | Tue, 28 Jul 2020 12:00:14 +0000 |
parents | da218944eee5 |
children | f2fc485558df |
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11:6770dfba8763 | 12:e72c8211d58a |
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10 # Each record in the SDF input is read and the closest heavy atom to each of the reference points is recorded as | 10 # Each record in the SDF input is read and the closest heavy atom to each of the reference points is recorded as |
11 # a property named distance1 where the numeric part is the index (starting from 1) of the points (in that example | 11 # a property named distance1 where the numeric part is the index (starting from 1) of the points (in that example |
12 # there would be properties for distance1, distance2 and distance3. | 12 # there would be properties for distance1, distance2 and distance3. |
13 | 13 |
14 import argparse, os, sys, math | 14 import argparse, os, sys, math |
15 | |
15 from openbabel import pybel | 16 from openbabel import pybel |
16 | |
17 | 17 |
18 | 18 |
19 def log(*args, **kwargs): | 19 def log(*args, **kwargs): |
20 """Log output to STDERR | 20 """Log output to STDERR |
21 """ | 21 """ |