comparison modify/ob_genProp.py @ 7:12822efbd4a4

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author bgruening
date Sat, 11 May 2013 17:11:45 -0400
parents 6493d130f018
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6:9d1f982555ba 7:12822efbd4a4
12 import cheminfolib 12 import cheminfolib
13 13
14 14
15 def parse_command_line(argv): 15 def parse_command_line(argv):
16 parser = argparse.ArgumentParser() 16 parser = argparse.ArgumentParser()
17 parser.add_argument('-iformat', default='sdf' , help='input file format') 17 parser.add_argument('--iformat', default='sdf' , help='input file format')
18 parser.add_argument('-i', '--input', required=True, help='input file name') 18 parser.add_argument('-i', '--input', required=True, help='input file name')
19 parser.add_argument('-oformat', default='sdf', choices = ['sdf', 'table'] , help='output file format') 19 parser.add_argument('--oformat', default='sdf', choices = ['sdf', 'table'] , help='output file format')
20 parser.add_argument('--header', type=bool, help='Include the header as the first line of the output table') 20 parser.add_argument('--header', type=bool, help='Include the header as the first line of the output table')
21 parser.add_argument('-o', '--output', required=True, help='output file name') 21 parser.add_argument('-o', '--output', required=True, help='output file name')
22 return parser.parse_args() 22 return parser.parse_args()
23 23
24 def compute_properties(args): 24 def compute_properties(args):