# HG changeset patch # User bgruening # Date 1560529554 14400 # Node ID 2c8f9f803a9e72265fc971566356e96ebd12f5e6 # Parent 9c3aa605a24cc215b079502abb34e693f41fd930 planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/nanopolish commit 4478b7f7e16d56ff6c1ffa24ded1fc106f2379c6-dirty diff -r 9c3aa605a24c -r 2c8f9f803a9e test-data/all_fasta.loc --- a/test-data/all_fasta.loc Fri Jun 14 08:37:59 2019 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,1 +0,0 @@ -draft draft draft ${__HERE__}/draft.fa \ No newline at end of file diff -r 9c3aa605a24c -r 2c8f9f803a9e test-data/all_fasta.loc.test --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/all_fasta.loc.test Fri Jun 14 12:25:54 2019 -0400 @@ -0,0 +1,1 @@ +draft draft draft ${__HERE__}/draft.fa \ No newline at end of file diff -r 9c3aa605a24c -r 2c8f9f803a9e tool-data/all_fasta.loc.sample --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool-data/all_fasta.loc.sample Fri Jun 14 12:25:54 2019 -0400 @@ -0,0 +1,19 @@ +#This file lists the locations and dbkeys of all the fasta files +#under the "genome" directory (a directory that contains a directory +#for each build). The script extract_fasta.py will generate the file +#all_fasta.loc. This file has the format (white space characters are +#TAB characters): +# +# +# +#So, all_fasta.loc could look something like this: +# +#apiMel3 apiMel3 Honeybee (Apis mellifera): apiMel3 /path/to/genome/apiMel3/apiMel3.fa +#hg19canon hg19 Human (Homo sapiens): hg19 Canonical /path/to/genome/hg19/hg19canon.fa +#hg19full hg19 Human (Homo sapiens): hg19 Full /path/to/genome/hg19/hg19full.fa +# +#Your all_fasta.loc file should contain an entry for each individual +#fasta file. So there will be multiple fasta files for each build, +#such as with hg19 above. +# +