diff nanopolish_eventalign.xml @ 10:d03669da4b59 draft

"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/nanopolish commit 4883f9a9a2779e2b4792314bd6128c7c109c00e1"

--- a/nanopolish_eventalign.xml	Fri May 29 17:27:21 2020 +0000
+++ b/nanopolish_eventalign.xml	Fri May 07 06:46:05 2021 +0000
@@ -1,4 +1,4 @@
-<tool id="nanopolish_eventalign" name="Nanopolish eventalign" version="@VERSION@+galaxy0">
+<tool id="nanopolish_eventalign" name="Nanopolish eventalign" version="@VERSION@+galaxy1">
     <description>- Align nanopore events to reference k-mers</description>
     <macros>
         <import>macros.xml</import>
@@ -49,6 +49,7 @@
         --threads "\${GALAXY_SLOTS:-4}"        
         $samples
         $scale_events
+        $signal_index
         $sam
         $print_read_names
         #if $w and str($w).strip():
@@ -110,6 +111,10 @@
             label="Write the raw samples for the event to the tsv output" />
         <param name="scale_events" argument="--scale-events" type="boolean" truevalue="--scale-events" falsevalue="" checked="false"
             label="Scale events to the model, rather than vice-versa" />
+        <param name="signal_index" argument="--signal-index" type="boolean" truevalue="--signal-index" falsevalue="" checked="false"
+            label="write the raw signal start and end index values for the event to the tsv output" />
+
+
         <param argument="--sam" type="boolean" truevalue="--sam" falsevalue="" checked="false"
             label="write output in SAM format" />
         <param name="print_read_names" argument="--print-read-names" type="boolean" truevalue="--print-read-names" falsevalue="" checked="false"