Mercurial > repos > bgruening > music_construct_eset

diff construct_eset.xml @ 4:6b96f5202040 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/music/ commit d007ae51743e621dc47524f681501e72ef3a2910"
author bgruening
date Mon, 02 May 2022 09:54:34 +0000
parents baa425d177a3
children 6cac3dd7c404
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line diff
--- a/construct_eset.xml	Thu Feb 10 12:50:50 2022 +0000
+++ b/construct_eset.xml	Mon May 02 09:54:34 2022 +0000
@@ -1,11 +1,12 @@
 <tool id="music_construct_eset" name="Construct Expression Set Object" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@"
-      profile="20.05" license="GPL-3.0-or-later" >
+      profile="21.09" license="GPL-3.0-or-later" >
     <description>Create an ExpressionSet object from tabular and textual data</description>
     <macros>
         <import>macros.xml</import>
     </macros>
     <expand macro="requirements" />
     <command detect_errors="exit_code"><![CDATA[
+cat '$conf' >> /dev/stderr &&
 Rscript --vanilla '$conf'
 ]]></command>
     <configfiles>
@@ -103,6 +104,7 @@
                       annotation = annotation)
 
 capture.output(print(e_set), file = '$out_txt')
+print(e_set)
 saveRDS(e_set, file= '$out_rds')
 
         </configfile>