Mercurial > repos > bgruening > molecule2gspan

diff mol2gspan.xml @ 2:ec22d245d224 draft default tip

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Uploaded
author bgruening
date Thu, 17 Apr 2014 08:46:52 -0400
parents 5f97004c7f57
children
line wrap: on
line diff
--- a/mol2gspan.xml	Tue Apr 15 12:44:17 2014 -0400
+++ b/mol2gspan.xml	Thu Apr 17 08:46:52 2014 -0400
@@ -3,8 +3,15 @@
     <parallelism method="multi" split_inputs="infile" split_mode="to_size" split_size="10" shared_inputs="" merge_outputs="outfile"></parallelism>
     <requirements>
         <requirement type="package" version="2.3.2">openbabel</requirement>
-        <requirement type="set_environment">MOL2GSPAN_SCRIPT_PATH</requirement>
     </requirements>
+    <xml name="stdio">
+        <stdio>
+            <exit_code range="1:" />
+            <exit_code range=":-1" />
+            <regex match="Error" />
+            <regex match="Exception" />
+        </stdio>
+    </xml>
     <command interpreter="python">
         mol2gspan.py 
             --infile $infile