Mercurial > repos > bgruening > keras_batch_models
annotate keras_macros.xml @ 11:508cf7278239 draft
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ea12f973df4b97a2691d9e4ce6bf6fae59d57717"
author | bgruening |
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date | Sat, 01 May 2021 00:13:36 +0000 |
parents | 79efb5472c2e |
children | 722f65fbd42b |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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1 <macros> |
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79efb5472c2e
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 5b2ac730ec6d3b762faa9034eddd19ad1b347476"
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2 <token name="@KERAS_VERSION@">0.5.0</token> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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3 |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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4 <xml name="macro_stdio"> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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5 <stdio> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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6 <exit_code range="1:" level="fatal" description="Error occurred. Please check Tool Standard Error"/> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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7 </stdio> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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8 </xml> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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9 |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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10 <xml name="keras_optimizer_common" token_lr="0.01"> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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11 <section name="optimizer_options" title="Optimizer Advanced Options" expanded="false"> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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12 <param argument="lr" type="float" value="@LR@" optional="true" label="Learning rate" help="float >= 0"/> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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13 <yield/> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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14 <!--param argument="clipnorm" type="float" value="" optional="true" label="clipnorm" help="float >= 0"/--> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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15 <!--param argument="clipvalue" type="float" value="" optional="true" label="clipvalue" help="float >= 0"/--> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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16 </section> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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17 </xml> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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18 |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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19 <xml name="keras_optimizer_common_more" token_lr="0.001"> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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20 <expand macro="keras_optimizer_common" lr="@LR@"> |
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79efb5472c2e
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 5b2ac730ec6d3b762faa9034eddd19ad1b347476"
bgruening
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21 <!--param argument="epsilon" type="float" value="" label="epsilon" optional="true" help="Fuzz factor. If `None`, defaults to `K.epsilon()`"/>--> |
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f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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22 <param argument="decay" type="float" value="0" optional="true" label="decay" help="Learning rate decay over each update."/> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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23 <yield/> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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24 </expand> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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25 </xml> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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26 |
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5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
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27 <xml name="keras_activations" token_none="true" token_tanh="false"> |
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f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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28 <param argument="activation" type="select" label="Activation function"> |
1
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
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29 <option value="linear" selected="@NONE@">None / linear (default)</option> |
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f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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30 <option value="softmax">softmax</option> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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31 <option value="elu">elu</option> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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32 <option value="selu">selu</option> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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33 <option value="softplus">softplus</option> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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34 <option value="softsign">softsign</option> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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35 <option value="relu">relu</option> |
1
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
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36 <option value="tanh" selected="@TANH@">tanh</option> |
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f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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37 <option value="sigmoid">sigmoid</option> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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38 <option value="hard_sigmoid">hard_sigmoid</option> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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39 <option value="exponential">tanh</option> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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40 </param> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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41 </xml> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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42 |
1
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
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43 <xml name="keras_initializers" token_argument="kernel_initializer" token_default_glorot_uniform="false" token_default_zeros="false" token_default_random_uniform="false" token_default_ones="false"> |
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f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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44 <param argument="@ARGUMENT@" type="select" label="@ARGUMENT@"> |
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5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
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45 <option value="zeros" selected="@DEFAULT_ZEROS@">zero / zeros / Zeros</option> |
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
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46 <option value="ones" selected="@DEFAULT_ONES@">one / ones / Ones</option> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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47 <option value="constant">constant / Constant</option> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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48 <option value="random_normal">normal / random_normal / RandomNormal</option> |
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5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
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49 <option value="random_uniform" selected="@DEFAULT_RANDOM_UNIFORM@">uniform / random_uniform / RandomUniform</option> |
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f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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50 <option value="truncated_normal">truncated_normal / TruncatedNormal</option> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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51 <option value="orthogonal">orthogonal / Orthogonal</option> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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52 <option value="identity">identity / Identity</option> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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53 <option value="glorot_normal">glorot_normal</option> |
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5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
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54 <option value="glorot_uniform" selected="@DEFAULT_GLOROT_UNIFORM@">glorot_uniform</option> |
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f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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55 <option value="he_normal">he_normal</option> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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56 <option value="he_uniform">he_uniform</option> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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57 <option value="lecun_normal">lecun_normal</option> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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58 <option value="lecun_uniform">lecun_uniform</option> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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59 </param> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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60 </xml> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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61 |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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62 <xml name="keras_regularizers" token_argument="kernel_regularizer"> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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63 <param argument="@ARGUMENT@" type="text" value="(0. , 0.)" optional="true" label="@ARGUMENT@" |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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64 help="(l1, l2). l1/l2: float; L1/l2 regularization factor. (0., 0.) is equivalent to `None`"/> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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65 </xml> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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66 |
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67 <xml name="keras_constraints_options"> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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68 <section name="constraint_options" title="Constraint Advanced Options" expanded="false"> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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69 <yield/> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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70 <param argument="axis" type="text" value="0" help="Integer or list of integers. axis along which to calculate weight norms"> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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71 <sanitizer> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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72 <valid initial="default"> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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73 <add value="["/> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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74 <add value="]"/> |
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75 </valid> |
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76 </sanitizer> |
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77 </param> |
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78 </section> |
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79 </xml> |
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80 |
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81 <xml name="keras_constraints" token_argument="kernel_constraint"> |
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82 <conditional name="@ARGUMENT@"> |
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83 <param argument="constraint_type" type="select" label="@ARGUMENT@"> |
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84 <option value="None" selected="true">None (default)</option> |
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85 <option value="MaxNorm">maxnorm / max_norm / MaxNorm</option> |
f59a4f7c47f9
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86 <option value="NonNeg">nonneg / non_neg / NonNeg</option> |
f59a4f7c47f9
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87 <option value="UnitNorm">unitnorm / unit_norm / UnitNorm</option> |
f59a4f7c47f9
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88 <option value="MinMaxNorm">min_max_norm / MinMaxNorm</option> |
f59a4f7c47f9
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89 </param> |
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90 <when value="None"/> |
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91 <when value="MaxNorm"> |
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92 <expand macro="keras_constraints_options"> |
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93 <param argument="max_value" type="float" value="2" help="the maximum norm for the incoming weights."/> |
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94 </expand> |
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95 </when> |
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96 <when value="NonNeg"> |
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97 </when> |
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98 <when value="UnitNorm"> |
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99 <expand macro="keras_constraints_options"/> |
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100 </when> |
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101 <when value="MinMaxNorm"> |
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102 <expand macro="keras_constraints_options"> |
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103 <param argument="min_value" type="float" value="0." help="the minimum norm for the incoming weights."/> |
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104 <param argument="max_value" type="float" value="1." help="the maximum norm for the incoming weights."/> |
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105 <param argument="max_value" type="float" value="1." help="rate for enforcing the constraint."/> |
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106 </expand> |
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107 </when> |
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108 </conditional> |
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109 </xml> |
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110 |
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111 <xml name="keras_layer_types_core"> |
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"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
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112 <option value="Dense">Core -- Dense</option> |
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"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
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113 <option value="Activation">Core -- Activation</option> |
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"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
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114 <option value="Dropout">Core -- Dropout</option> |
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"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
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115 <option value="Flatten">Core -- Flatten</option> |
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"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
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116 <option value="Reshape">Core -- Reshape</option> |
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"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
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117 <option value="Permute">Core -- Permute</option> |
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"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
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118 <option value="RepeatVector">Core -- RepeatVector</option> |
0
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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119 <!--option value="Lambda">Lambda - Not supported</option--> |
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"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
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120 <option value="ActivityRegularization">Core -- ActivityRegularization</option> |
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
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121 <option value="Masking">Core -- Masking</option> |
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"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
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122 <option value="SpatialDropout1D">Core -- SpatialDropout1D</option> |
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
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123 <option value="SpatialDropout2D">Core -- SpatialDropout2D</option> |
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
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124 <option value="SpatialDropout3D">Core -- SpatialDropout3D</option> |
0
f59a4f7c47f9
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125 </xml> |
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126 |
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127 <xml name="keras_layer_types_Convolutional"> |
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5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
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128 <option value="Conv1D">Convolutional -- Conv1D</option> |
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
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129 <option value="Conv2D">Convolutional -- Conv2D</option> |
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
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130 <option value="SeparableConv1D">Convolutional -- SeparableConv1D</option> |
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
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131 <option value="SeparableConv2D">Convolutional -- SeparableConv2D</option> |
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
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132 <option value="DepthwiseConv2D">Convolutional -- DepthwiseConv2D</option> |
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
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133 <option value="Conv2DTranspose">Convolutional -- Conv2DTranspose</option> |
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
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134 <option value="Conv3D">Convolutional -- Conv3D</option> |
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
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135 <option value="Conv3DTranspose">Convolutional -- Conv3DTranspose</option> |
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
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136 <option value="Cropping1D">Convolutional -- Cropping1D</option> |
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
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137 <option value="Cropping2D">Convolutional -- Cropping2D</option> |
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
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138 <option value="Cropping3D">Convolutional -- Cropping3D</option> |
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
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139 <option value="UpSampling1D">Convolutional -- UpSampling1D</option> |
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
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140 <option value="UpSampling2D">Convolutional -- UpSampling2D</option> |
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
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141 <option value="UpSampling3D">Convolutional -- UpSampling3D</option> |
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
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142 <option value="ZeroPadding1D">Convolutional -- ZeroPadding1D</option> |
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
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143 <option value="ZeroPadding2D">Convolutional -- ZeroPadding2D</option> |
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
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144 <option value="ZeroPadding3D">Convolutional -- ZeroPadding3D</option> |
0
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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145 </xml> |
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146 |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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147 <xml name="keras_layer_types_Pooling"> |
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5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
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148 <option value="MaxPooling1D">Pooling -- MaxPooling1D</option> |
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
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149 <option value="MaxPooling2D">Pooling -- MaxPooling2D</option> |
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
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150 <option value="MaxPooling3D">Pooling -- MaxPooling3D</option> |
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
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151 <option value="AveragePooling1D">Pooling -- AveragePooling1D</option> |
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
parents:
0
diff
changeset
|
152 <option value="AveragePooling2D">Pooling -- AveragePooling2D</option> |
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
parents:
0
diff
changeset
|
153 <option value="AveragePooling3D">Pooling -- AveragePooling3D</option> |
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
parents:
0
diff
changeset
|
154 <option value="GlobalMaxPooling1D">Pooling -- GlobalMaxPooling1D</option> |
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
parents:
0
diff
changeset
|
155 <option value="GlobalAveragePooling1D">Pooling -- GlobalAveragePooling1D</option> |
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
parents:
0
diff
changeset
|
156 <option value="GlobalMaxPooling2D">Pooling -- GlobalMaxPooling2D</option> |
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
parents:
0
diff
changeset
|
157 <option value="GlobalAveragePooling2D">Pooling -- GlobalAveragePooling2D</option> |
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
parents:
0
diff
changeset
|
158 <option value="GlobalMaxPooling3D">Pooling -- GlobalMaxPooling3D</option> |
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
parents:
0
diff
changeset
|
159 <option value="GlobalAveragePooling3D">Pooling -- GlobalAveragePooling3D</option> |
0
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
160 </xml> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
161 |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
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|
162 <xml name="keras_layer_types_locally_connected"> |
1
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
parents:
0
diff
changeset
|
163 <option value="LocallyConnected1D">Locally_connected -- LocallyConnected1D</option> |
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
parents:
0
diff
changeset
|
164 <option value="LocallyConnected2D">Locally_connected -- LocallyConnected2D</option> |
0
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
165 </xml> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
166 |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
167 <xml name="keras_layer_types_recurrent"> |
1
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
parents:
0
diff
changeset
|
168 <option value="SimpleRNN">Recurrent -- SimpleRNN</option> |
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
parents:
0
diff
changeset
|
169 <option value="GRU">Recurrent -- GRU</option> |
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
parents:
0
diff
changeset
|
170 <option value="LSTM">Recurrent -- LSTM</option> |
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
parents:
0
diff
changeset
|
171 <option value="ConvLSTM2D">Recurrent -- ConvLSTM2D</option> |
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
parents:
0
diff
changeset
|
172 <option value="ConvLSTM2DCell">Recurrent -- ConvLSTM2DCell</option> |
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
parents:
0
diff
changeset
|
173 <option value="SimpleRNNCell">Recurrent -- SimpleRNNCell</option> |
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
parents:
0
diff
changeset
|
174 <option value="GRUCell">Recurrent -- GRUCell</option> |
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
parents:
0
diff
changeset
|
175 <option value="LSTMCell">Recurrent -- LSTMCell</option> |
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
parents:
0
diff
changeset
|
176 <option value="CuDNNGRU">Recurrent -- CuDNNGRU</option> |
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
parents:
0
diff
changeset
|
177 <option value="CuDNNLSTM">Recurrent -- CuDNNLSTM</option> |
0
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
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|
178 </xml> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
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|
179 |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
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|
180 <xml name="keras_layer_types_embedding"> |
1
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
parents:
0
diff
changeset
|
181 <option value="Embedding">Embedding -- Embedding</option> |
0
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
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|
182 </xml> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
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183 |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
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|
184 <xml name="keras_layer_types_advanced_activations"> |
1
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
parents:
0
diff
changeset
|
185 <option value="LeakyReLU">Advanced activations -- LeakyReLU</option> |
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
parents:
0
diff
changeset
|
186 <option value="PReLU">Advanced activations -- PReLU</option> |
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
parents:
0
diff
changeset
|
187 <option value="ELU">Advanced activations -- ELU</option> |
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
parents:
0
diff
changeset
|
188 <option value="ThresholdedReLU">Advanced activations -- ThresholdedReLU</option> |
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
parents:
0
diff
changeset
|
189 <option value="Softmax">Advanced activations -- Softmax</option> |
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
parents:
0
diff
changeset
|
190 <option value="ReLU">Advanced activations -- ReLU</option> |
0
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
191 </xml> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
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|
192 |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
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|
193 <xml name="keras_layer_types_normalization"> |
1
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
parents:
0
diff
changeset
|
194 <option value="BatchNormalization">Normalization -- BatchNormalization</option> |
0
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
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|
195 </xml> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
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changeset
|
196 |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
197 <xml name="keras_layer_types_noise"> |
1
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
parents:
0
diff
changeset
|
198 <option value="GaussianNoise">Noise -- GaussianNoise</option> |
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
parents:
0
diff
changeset
|
199 <option value="GaussianDropout">Noise -- GaussianDropout</option> |
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
parents:
0
diff
changeset
|
200 <option value="AlphaDropout">Noise -- AlphaDropout</option> |
0
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
201 </xml> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
202 |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
203 <xml name="keras_layer_types_merge"> |
1
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
parents:
0
diff
changeset
|
204 <option value="Add">Merge -- Add</option> |
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
parents:
0
diff
changeset
|
205 <option value="Subtract">Merge -- Subtract</option> |
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
parents:
0
diff
changeset
|
206 <option value="Multiply">Merge -- Multiply</option> |
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
parents:
0
diff
changeset
|
207 <option value="Average">Merge -- Average</option> |
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
parents:
0
diff
changeset
|
208 <option value="Maximum">Merge -- Maximum</option> |
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
parents:
0
diff
changeset
|
209 <option value="Minimum">Merge -- Minimum</option> |
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
parents:
0
diff
changeset
|
210 <option value="Concatenate">Merge -- Concatenate</option> |
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
parents:
0
diff
changeset
|
211 <option value="Dot">Merge -- Dot</option> |
0
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
212 </xml> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
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changeset
|
213 |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
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|
214 <!--Core Layers--> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
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changeset
|
215 |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
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changeset
|
216 <xml name="layer_Dense"> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
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|
217 <param argument="units" type="integer" value="" optional="false" label="units" help="Positive integer, dimensionality of the output space."/> |
1
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
parents:
0
diff
changeset
|
218 <expand macro="keras_activations"/> |
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
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|
219 <expand macro="simple_kwargs" help="For example: use_bias=True, kernel_initializer='glorot_uniform', bias_initializer='zeros', kernel_regularizer=None, bias_regularizer=None, activity_regularizer=None, kernel_constraint=None, bias_constraint=None. Leave blank for default."/> |
0
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
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changeset
|
220 <yield/> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
221 </xml> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
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changeset
|
222 |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
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changeset
|
223 <xml name="layer_Dropout"> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
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changeset
|
224 <param argument="rate" type="float" value="" min="0." max="1.0" help="Fraction of the input units to drop."/> |
1
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
parents:
0
diff
changeset
|
225 <expand macro="simple_kwargs" help="For example: noise_shape=None, seed=None. Leave blank for default."/> |
0
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
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changeset
|
226 <yield/> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
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changeset
|
227 </xml> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
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changeset
|
228 |
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229 <xml name="layer_Flatten"> |
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230 <param argument="data_format" type="select" help="The ordering of the dimensions in the inputs."> |
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231 <option value="channels_last">channels_last</option> |
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232 <option value="channels_first">channels_first</option> |
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233 </param> |
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234 <yield/> |
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235 </xml> |
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236 |
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237 <xml name="layer_Input"> |
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238 <param argument="shape" type="text" value="" help="A shape tuple (integer), not including the batch size.For instance, `shape=(32,)`"/> |
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239 <!--param argument="batch_shape" type="text" value="" optional="true" help="A shape tuple (integer), including the batch size.For instance, `batch_shape=(10, 32)`"/--> |
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240 <param argument="name" type="text" value="" optional="true" help="An optional string name for the layer. Unique. autogenerated if it isn't provided."/> |
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241 <param argument="dtype" type="select" help="The data type expected by the input"> |
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242 <option value="float32" selected="true">float32</option> |
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243 <option value="float64">float64</option> |
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244 <option value="int32">int32</option> |
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245 <option value="int64">int64</option> |
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246 <!--TODO add more DTYPEs--> |
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247 </param> |
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248 <param argument="sparse" type="boolean" truevalue="booltrue" falsevalue="boolfalse" optional="true" checked="false" /> |
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249 <!--param argument="tensor" type="data" format="zip" help="Optional existing tensor to wrap into the `Input` layer."/ --> |
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250 <yield/> |
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251 </xml> |
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252 |
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253 <xml name="layer_Reshape"> |
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254 <param argument="target_shape" type="text" value="" help="Tuple of integers. Does not include the batch axis."/> |
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255 <yield/> |
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256 </xml> |
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257 |
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258 <xml name="layer_Permute"> |
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259 <param argument="dims" type="text" value="" help="Tuple of integers. Permutation pattern, does not include the samples dimension. |
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260 Indexing starts at 1. For instance, (2, 1) permutes the first and second dimension of the input."/> |
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261 <yield/> |
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262 </xml> |
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263 |
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264 <xml name="layer_RepeatVector"> |
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265 <param argument="n" type="integer" value="" help="repetition factor"/> |
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266 </xml> |
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267 |
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268 <xml name="layer_Lambda"> |
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269 <param argument="function" type="text" value="lambda x: " help="The function to be evaluated. Only lambda function is supported!"/> |
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270 <yield/> |
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271 </xml> |
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272 |
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273 <xml name="layer_ActivityRegularization"> |
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274 <param argument="l1" type="float" value="0." min="0." help="L1 regularization factor (positive float)."/> |
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275 <param argument="l2" type="float" value="0." min="0." help="L2 regularization factor (positive float)."/> |
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276 <yield/> |
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277 </xml> |
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278 |
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279 <xml name="layer_Masking"> |
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280 <param argument="mask_value" type="float" value="0." help="Masks a sequence by using a mask value to skip timesteps."/> |
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281 <yield/> |
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282 </xml> |
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283 |
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284 <xml name="layer_SpatialDropout1D"> |
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285 <param argument="rate" type="float" value="" min="0." max="1." help="Fraction of the input units to drop."/> |
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286 <yield/> |
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287 </xml> |
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288 |
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289 <xml name="layer_SpatialDropout2D"> |
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290 <param argument="rate" type="float" value="" min="0." max="1." help="Fraction of the input units to drop."/> |
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"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
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291 <expand macro="simple_kwargs" help="For example: data_format=None. Leave blank for default."/> |
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292 <yield/> |
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293 </xml> |
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294 |
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295 <xml name="layer_SpatialDropout3D"> |
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296 <param argument="rate" type="float" value="" min="0." max="1." help="Fraction of the input units to drop."/> |
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"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
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297 <expand macro="simple_kwargs" help="For example: data_format=None. Leave blank for default."/> |
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298 <yield/> |
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299 </xml> |
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300 |
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301 <!--Convolutional Layers--> |
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302 |
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303 <xml name="layer_Conv1D"> |
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304 <param argument="filters" type="integer" value="" min="0" help="the dimensionality of the output space (i.e. the number of output filters in the convolution)."/> |
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305 <param argument="kernel_size" type="text" value="" help="An integer or tuple/list of a single integer, specifying the length of the 1D convolution window."/> |
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"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
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306 <expand macro="keras_activations"/> |
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"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
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307 <expand macro="simple_kwargs" help="For example: strides=1, padding='valid', data_format='channels_last', dilation_rate=1, use_bias=True, kernel_initializer='glorot_uniform', bias_initializer='zeros', kernel_regularizer=None, bias_regularizer=None, activity_regularizer=None, kernel_constraint=None, bias_constraint=None. Leave blank for default."/> |
0
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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308 <yield/> |
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309 </xml> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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310 |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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311 <xml name="layer_Conv2D"> |
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312 <param argument="filters" type="integer" value="" min="0" help="the dimensionality of the output space (i.e. the number of output filters in the convolution)."/> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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313 <param argument="kernel_size" type="text" value="" help="An integer or tuple/list of 2 integers, specifying the height and width of the 2D convolution window."/> |
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"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
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314 <expand macro="keras_activations"/> |
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"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
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315 <expand macro="simple_kwargs" help="For example: strides=(1, 1), padding='valid', data_format=None, dilation_rate=(1, 1), use_bias=True, kernel_initializer='glorot_uniform', bias_initializer='zeros', kernel_regularizer=None, bias_regularizer=None, activity_regularizer=None, kernel_constraint=None, bias_constraint=None. Leave blank for default."/> |
0
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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316 <yield/> |
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317 </xml> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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318 |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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319 <xml name="layer_SeparableConv1D"> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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320 <param argument="filters" type="integer" value="" min="0" help="the dimensionality of the output space (i.e. the number of output filters in the convolution)."/> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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321 <param argument="kernel_size" type="text" value="" help="An integer or tuple/list of a single integer, specifying the length of the 1D convolution window."/> |
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"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
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322 <expand macro="keras_activations"/> |
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
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323 <expand macro="simple_kwargs" help="For example: strides=1, padding='valid', data_format='channels_last', dilation_rate=1, depth_multiplier=1, use_bias=True, depthwise_initializer='glorot_uniform', pointwise_initializer='glorot_uniform', bias_initializer='zeros', depthwise_regularizer=None, pointwise_regularizer=None, bias_regularizer=None, activity_regularizer=None, depthwise_constraint=None, pointwise_constraint=None, bias_constraint=None. Leave blank for default."/> |
0
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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324 <yield/> |
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325 </xml> |
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326 |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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327 <xml name="layer_SeparableConv2D"> |
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328 <param argument="filters" type="integer" value="" min="0" help="the dimensionality of the output space (i.e. the number of output filters in the convolution)."/> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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329 <param argument="kernel_size" type="text" value="" help="An integer or tuple/list of 2 integers, specifying the height and width of the 2D convolution window."/> |
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"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
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330 <expand macro="keras_activations"/> |
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"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
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331 <expand macro="simple_kwargs" help="For example: strides=(1, 1), padding='valid', data_format=None, dilation_rate=(1, 1), depth_multiplier=1, use_bias=True, depthwise_initializer='glorot_uniform', pointwise_initializer='glorot_uniform', bias_initializer='zeros', depthwise_regularizer=None, pointwise_regularizer=None, bias_regularizer=None, activity_regularizer=None, depthwise_constraint=None, pointwise_constraint=None, bias_constraint=None. Leave blank for default."/> |
0
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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332 <yield/> |
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333 </xml> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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334 |
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335 <xml name="layer_DepthwiseConv2D"> |
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"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
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336 |
0
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337 <param argument="kernel_size" type="text" value="" help="An integer or tuple/list of 2 integers, specifying the height and width of the 2D convolution window."/> |
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5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
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338 <expand macro="keras_activations"/> |
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"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
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339 <expand macro="simple_kwargs" help="For example: strides=(1, 1), padding='valid', depth_multiplier=1, data_format=None, use_bias=True, depthwise_initializer='glorot_uniform', bias_initializer='zeros', depthwise_regularizer=None, bias_regularizer=None, activity_regularizer=None, depthwise_constraint=None, bias_constraint=None. Leave blank for default."/> |
0
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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340 <yield/> |
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341 </xml> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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342 |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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343 <xml name="layer_Conv2DTranspose"> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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344 <param argument="filters" type="integer" value="" min="0" help="the dimensionality of the output space (i.e. the number of output filters in the convolution)."/> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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345 <param argument="kernel_size" type="text" value="" help="An integer or tuple/list of 2 integers, specifying the height and width of the 2D convolution window."/> |
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"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
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346 <expand macro="keras_activations"/> |
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"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
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347 <expand macro="simple_kwargs" help="For example: strides=(1, 1), padding='valid', output_padding=None, data_format=None, dilation_rate=(1, 1), use_bias=True, kernel_initializer='glorot_uniform', bias_initializer='zeros', kernel_regularizer=None, bias_regularizer=None, activity_regularizer=None, kernel_constraint=None, bias_constraint=None. Leave blank for default."/> |
0
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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348 <yield/> |
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349 </xml> |
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350 |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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351 <xml name="layer_Conv3D"> |
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352 <param argument="filters" type="integer" value="" min="0" help="the dimensionality of the output space (i.e. the number of output filters in the convolution)."/> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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353 <param argument="kernel_size" type="text" value="" help="An integer or tuple/list of 3 integers, specifying the depth, height and width of the 3D convolution window."/> |
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5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
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354 <expand macro="keras_activations"/> |
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"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
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355 <expand macro="simple_kwargs" help="For example: strides=(1, 1, 1), padding='valid', data_format=None, dilation_rate=(1, 1, 1), use_bias=True, kernel_initializer='glorot_uniform', bias_initializer='zeros', kernel_regularizer=None, bias_regularizer=None, activity_regularizer=None, kernel_constraint=None, bias_constraint=None. Leave blank for default."/> |
0
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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356 <yield/> |
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357 </xml> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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358 |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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359 <xml name="layer_Conv3DTranspose"> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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360 <param argument="filters" type="integer" value="" min="0" help="the dimensionality of the output space (i.e. the number of output filters in the convolution)."/> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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361 <param argument="kernel_size" type="text" value="" help="An integer or tuple/list of 3 integers, specifying the depth, height and width of the 3D convolution window."/> |
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5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
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362 <expand macro="keras_activations"/> |
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"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
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363 <expand macro="simple_kwargs" help="For example: strides=(1, 1, 1), padding='valid', output_padding=None, data_format=None, activation=None, use_bias=True, kernel_initializer='glorot_uniform', bias_initializer='zeros', kernel_regularizer=None, bias_regularizer=None, activity_regularizer=None, kernel_constraint=None, bias_constraint=None. Leave blank for default."/> |
0
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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364 <yield/> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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365 </xml> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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366 |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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367 <xml name="layer_Cropping1D"> |
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"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
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368 <param argument="cropping" type="text" value="(1, 1)" help="int or tuple of int (length 2) How many units should be trimmed off at the beginning and end of the cropping dimension (axis 1). If a single int is provided, the same value will be used for both."/> |
0
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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369 <yield/> |
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370 </xml> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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371 |
f59a4f7c47f9
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372 <xml name="layer_Cropping2D"> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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373 <param argument="cropping" type="text" value="((0, 0), (0, 0))" help="int, or tuple of 2 ints, or tuple of 2 tuples of 2 ints."/> |
1
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
parents:
0
diff
changeset
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374 <expand macro="simple_kwargs" help="For example: data_format=None. Leave blank for default."/> |
0
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
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|
375 <yield/> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
376 </xml> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
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changeset
|
377 |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
378 <xml name="layer_Cropping3D"> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
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379 <param argument="cropping" type="text" value="((1, 1), (1, 1), (1, 1))" help="int, or tuple of 3 ints, or tuple of 3 tuples of 2 ints."/> |
1
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
parents:
0
diff
changeset
|
380 <expand macro="simple_kwargs" help="For example: data_format=None. Leave blank for default."/> |
0
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
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381 <yield/> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
382 </xml> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
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changeset
|
383 |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
384 <xml name="layer_UpSampling1D"> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
385 <param argument="size" type="integer" value="2" min="0" help="integer. Upsampling factor."/> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
386 <yield/> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
387 </xml> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
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changeset
|
388 |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
389 <xml name="layer_UpSampling2D"> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
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390 <param argument="size" type="text" value="(2, 2)" help="int, or tuple of 2 integers. The upsampling factors for rows and columns."/> |
1
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
parents:
0
diff
changeset
|
391 <expand macro="simple_kwargs" help="For example: data_format=None, interpolation='nearest'. Leave blank for default."/> |
0
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
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changeset
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392 <yield/> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
393 </xml> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
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394 |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
395 <xml name="layer_UpSampling3D"> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
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|
396 <param argument="size" type="text" value="(2, 2, 2)" help="int, or tuple of 3 integers. The upsampling factors for dim1, dim2 and dim3."/> |
1
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
parents:
0
diff
changeset
|
397 <expand macro="simple_kwargs" help="For example: data_format=None, interpolation='nearest'. Leave blank for default."/> |
0
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
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changeset
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398 <yield/> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
399 </xml> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
400 |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
401 <xml name="layer_ZeroPadding1D"> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
402 <param argument="padding" type="text" value="1" help="int, or tuple of int (length 2)"/> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
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changeset
|
403 <yield/> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
404 </xml> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
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|
405 |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
406 <xml name="layer_ZeroPadding2D"> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
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changeset
|
407 <param argument="padding" type="text" value="(1, 1)" help="int, or tuple of 2 ints, or tuple of 2 tuples of 2 ints."/> |
1
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
parents:
0
diff
changeset
|
408 <expand macro="simple_kwargs" help="For example: data_format=None. Leave blank for default."/> |
0
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
409 <yield/> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
410 </xml> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
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changeset
|
411 |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
412 <xml name="layer_ZeroPadding3D"> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
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changeset
|
413 <param argument="padding" type="text" value="(1, 1, 1)" help="int, or tuple of 3 ints, or tuple of 3 tuples of 2 ints."/> |
1
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
parents:
0
diff
changeset
|
414 <expand macro="simple_kwargs" help="For example: data_format=None. Leave blank for default."/> |
0
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
415 <yield/> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
416 </xml> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
417 |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
418 <!--Pooling Layers--> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
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|
419 |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
420 <xml name="layer_MaxPooling1D"> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
421 <param name="pool_size" type="integer" value="2" help="Integer, size of the max pooling windows."/> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
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422 <param name="strides" type="integer" value="" help="Integer, or None. Factor by which to downscale. E.g. 2 will halve the input. If None, it will default to pool_size."/> |
1
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
parents:
0
diff
changeset
|
423 <expand macro="simple_kwargs" help="For example: padding='valid', data_format='channels_last'. Leave blank for default."/> |
0
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
424 <yield/> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
425 </xml> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
426 |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
427 <xml name="layer_MaxPooling2D"> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
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428 <param name="pool_size" type="text" value="(2, 2)" help="integer or tuple of 2 integers, factors by which to downscale (vertical, horizontal)"/> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
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changeset
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429 <param name="strides" type="text" value="" help="Integer, tuple of 2 integers, or None. Strides values. If None, it will default to pool_size."/> |
1
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
parents:
0
diff
changeset
|
430 <expand macro="simple_kwargs" help="For example: padding='valid', data_format='channels_last'. Leave blank for default."/> |
0
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
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|
431 <yield/> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
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432 </xml> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
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|
433 |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
434 <xml name="layer_MaxPooling3D"> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
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|
435 <param name="pool_size" type="text" value="(2, 2, 2)" help="tuple of 3 integers, factors by which to downscale (dim1, dim2, dim3). |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
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changeset
|
436 (2, 2, 2) will halve the size of the 3D input in each dimension."/> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
437 <param name="strides" type="text" value="" help="tuple of 3 integers, or None. If None, it will default to pool_size."/> |
1
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
parents:
0
diff
changeset
|
438 <expand macro="simple_kwargs" help="For example: padding='valid', data_format='channels_last'. Leave blank for default."/> |
0
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
439 <yield/> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
440 </xml> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
441 |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
442 <xml name="layer_AveragePooling1D"> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
443 <param name="pool_size" type="integer" value="2" help="Integer, size of the max pooling windows."/> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
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changeset
|
444 <param name="strides" type="integer" value="" help="Integer, or None. Factor by which to downscale. E.g. 2 will halve the input. If None, it will default to pool_size."/> |
1
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
parents:
0
diff
changeset
|
445 <expand macro="simple_kwargs" help="For example: padding='valid', data_format='channels_last'. Leave blank for default."/> |
0
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
446 <yield/> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
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changeset
|
447 </xml> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
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changeset
|
448 |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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449 <xml name="layer_AveragePooling2D"> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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450 <param name="pool_size" type="text" value="(2, 2)" help="integer or tuple of 2 integers, factors by which to downscale (vertical, horizontal)"/> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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451 <param name="strides" type="text" value="" help=" Integer, tuple of 2 integers, or None. Strides values. If None, it will default to pool_size."/> |
1
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
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452 <expand macro="simple_kwargs" help="For example: padding='valid', data_format='channels_last'. Leave blank for default."/> |
0
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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453 <yield/> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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|
454 </xml> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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|
455 |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
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changeset
|
456 <xml name="layer_AveragePooling3D"> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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|
457 <param name="pool_size" type="text" value="(2, 2, 2)" help="tuple of 3 integers, factors by which to downscale (dim1, dim2, dim3). |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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458 (2, 2, 2) will halve the size of the 3D input in each dimension."/> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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459 <param name="strides" type="text" value="" help="tuple of 3 integers, or None. If None, it will default to pool_size."/> |
1
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
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changeset
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460 <expand macro="simple_kwargs" help="For example: padding='valid', data_format='channels_last'. Leave blank for default."/> |
0
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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461 <yield/> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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462 </xml> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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463 |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
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changeset
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464 <xml name="layer_GlobalMaxPooling1D"> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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465 <param argument="data_format" type="select" help="The ordering of the dimensions in the inputs."> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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changeset
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466 <option value="channels_last" selected="true">channels_last - inputs with shape (batch, steps, channels)</option> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
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467 <option value="channels_first">channels_first - inputs with shape (batch, channels, steps)</option> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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468 </param> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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469 <yield/> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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470 </xml> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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|
471 |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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changeset
|
472 <xml name="layer_GlobalMaxPooling2D"> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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473 <param argument="data_format" type="select" help="The ordering of the dimensions in the inputs."> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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changeset
|
474 <option value="channels_last" selected="true">channels_last - inputs with shape (batch, height, width, channels)</option> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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changeset
|
475 <option value="channels_first">channels_first - inputs with shape (batch, channels, height, width)</option> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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476 </param> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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477 <yield/> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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478 </xml> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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|
479 |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
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480 <xml name="layer_GlobalMaxPooling3D"> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
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481 <param argument="data_format" type="select" help="The ordering of the dimensions in the inputs."> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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|
482 <option value="channels_last" selected="true">channels_last - inputs with shape (batch, spatial_dim1, spatial_dim2, spatial_dim3, channels)</option> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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|
483 <option value="channels_first">channels_first - inputs with shape (batch, channels, spatial_dim1, spatial_dim2, spatial_dim3)</option> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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484 </param> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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|
485 <yield/> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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486 </xml> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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487 |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
488 <xml name="layer_GlobalAveragePooling1D"> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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489 <param argument="data_format" type="select" help="The ordering of the dimensions in the inputs."> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
490 <option value="channels_last" selected="true">channels_last - inputs with shape (batch, steps, channels)</option> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
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491 <option value="channels_first">channels_first - inputs with shape (batch, channels, steps)</option> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff
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|
492 </param> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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|
493 <yield/> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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|
494 </xml> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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|
495 |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
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changeset
|
496 <xml name="layer_GlobalAveragePooling2D"> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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497 <param argument="data_format" type="select" help="The ordering of the dimensions in the inputs."> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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|
498 <option value="channels_last" selected="true">channels_last - inputs with shape (batch, height, width, channels)</option> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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499 <option value="channels_first">channels_first - inputs with shape (batch, channels, height, width)</option> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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|
500 </param> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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|
501 <yield/> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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|
502 </xml> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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|
503 |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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|
504 <xml name="layer_GlobalAveragePooling3D"> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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505 <param argument="data_format" type="select" help="The ordering of the dimensions in the inputs."> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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|
506 <option value="channels_last" selected="true">channels_last - inputs with shape (batch, spatial_dim1, spatial_dim2, spatial_dim3, channels)</option> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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|
507 <option value="channels_first">channels_first - inputs with shape (batch, channels, spatial_dim1, spatial_dim2, spatial_dim3)</option> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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|
508 </param> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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|
509 <yield/> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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changeset
|
510 </xml> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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|
511 |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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|
512 <!--Locally-connected Layers--> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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|
513 |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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|
514 <xml name="layer_LocallyConnected1D"> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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515 <param argument="filters" type="integer" value="" min="0" help="the dimensionality of the output space (i.e. the number of output filters in the convolution)."/> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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|
516 <param argument="kernel_size" type="text" value="" help="An integer or tuple/list of a single integer, specifying the length of the 1D convolution window."/> |
1
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
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517 <expand macro="keras_activations"/> |
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
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518 <expand macro="simple_kwargs" help="For example: strides=1, padding='valid', data_format=None, use_bias=True, kernel_initializer='glorot_uniform', bias_initializer='zeros', kernel_regularizer=None, bias_regularizer=None, activity_regularizer=None, kernel_constraint=None, bias_constraint=None. Leave blank for default."/> |
0
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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|
519 <yield/> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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|
520 </xml> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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|
521 |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
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changeset
|
522 <xml name="layer_LocallyConnected2D"> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
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|
523 <param argument="filters" type="integer" value="" min="0" help="the dimensionality of the output space (i.e. the number of output filters in the convolution)."/> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
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|
524 <param argument="kernel_size" type="text" value="" help="An integer or tuple/list of 2 integers, specifying the height and width of the 2D convolution window."/> |
1
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
parents:
0
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|
525 <expand macro="keras_activations"/> |
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
parents:
0
diff
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|
526 <expand macro="simple_kwargs" help="For example: strides=(1, 1), padding='valid', data_format=None, use_bias=True, kernel_initializer='glorot_uniform', bias_initializer='zeros', kernel_regularizer=None, bias_regularizer=None, activity_regularizer=None, kernel_constraint=None, bias_constraint=None. Leave blank for default."/> |
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
parents:
0
diff
changeset
|
527 <yield/> |
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
parents:
0
diff
changeset
|
528 </xml> |
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
parents:
0
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changeset
|
529 |
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
parents:
0
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|
530 <!--Recurrent Layers--> |
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
parents:
0
diff
changeset
|
531 |
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
parents:
0
diff
changeset
|
532 <xml name="layer_SimpleRNN"> |
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
parents:
0
diff
changeset
|
533 <param argument="units" type="integer" value="" min="1" help="Positive integer, dimensionality of the output space."/> |
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
parents:
0
diff
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|
534 <expand macro="simple_kwargs" help="For example: activation='tanh', use_bias=True, kernel_initializer='glorot_uniform', recurrent_initializer='orthogonal', bias_initializer='zeros', kernel_regularizer=None, recurrent_regularizer=None, bias_regularizer=None, activity_regularizer=None, kernel_constraint=None, recurrent_constraint=None, bias_constraint=None, dropout=0.0, recurrent_dropout=0.0, return_sequences=False, return_state=False, go_backwards=False, stateful=False, unroll=False. Leave blank for default."/> |
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
parents:
0
diff
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|
535 <yield/> |
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
parents:
0
diff
changeset
|
536 </xml> |
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
parents:
0
diff
changeset
|
537 |
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
parents:
0
diff
changeset
|
538 <xml name="layer_GRU"> |
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
parents:
0
diff
changeset
|
539 <param argument="units" type="integer" value="" min="1" help="Positive integer, dimensionality of the output space."/> |
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
parents:
0
diff
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|
540 <expand macro="simple_kwargs" help="For example: activation='tanh', recurrent_activation='hard_sigmoid', use_bias=True, kernel_initializer='glorot_uniform', recurrent_initializer='orthogonal', bias_initializer='zeros', kernel_regularizer=None, recurrent_regularizer=None, bias_regularizer=None, activity_regularizer=None, kernel_constraint=None, recurrent_constraint=None, bias_constraint=None, dropout=0.0, recurrent_dropout=0.0, implementation=1, return_sequences=False, return_state=False, go_backwards=False, stateful=False, unroll=False, reset_after=False. Leave blank for default."/> |
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
parents:
0
diff
changeset
|
541 <yield/> |
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
parents:
0
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changeset
|
542 </xml> |
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
parents:
0
diff
changeset
|
543 |
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
parents:
0
diff
changeset
|
544 <xml name="layer_LSTM"> |
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
parents:
0
diff
changeset
|
545 <param argument="units" type="integer" value="" min="1" help="Positive integer, dimensionality of the output space."/> |
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
parents:
0
diff
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|
546 <expand macro="simple_kwargs" help="For example: activation='tanh', recurrent_activation='hard_sigmoid', use_bias=True, kernel_initializer='glorot_uniform', recurrent_initializer='orthogonal', bias_initializer='zeros', unit_forget_bias=True, kernel_regularizer=None, recurrent_regularizer=None, bias_regularizer=None, activity_regularizer=None, kernel_constraint=None, recurrent_constraint=None, bias_constraint=None, dropout=0.0, recurrent_dropout=0.0, implementation=1, return_sequences=False, return_state=False, go_backwards=False, stateful=False, unroll=False. Leave blank for default."/> |
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
parents:
0
diff
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|
547 <yield/> |
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
parents:
0
diff
changeset
|
548 </xml> |
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
parents:
0
diff
changeset
|
549 |
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
parents:
0
diff
changeset
|
550 <xml name="layer_ConvLSTM2D"> |
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
parents:
0
diff
changeset
|
551 <param argument="filters" type="integer" value="" min="0" help="the dimensionality of the output space (i.e. the number of output filters in the convolution)."/> |
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
parents:
0
diff
changeset
|
552 <param argument="kernel_size" type="text" value="" help="An integer or tuple/list of n integers, specifying the dimensions of the convolution window."/> |
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
parents:
0
diff
changeset
|
553 <expand macro="simple_kwargs" help="For example: strides=(1, 1), padding='valid', data_format=None, dilation_rate=(1, 1), activation='tanh', recurrent_activation='hard_sigmoid', use_bias=True, kernel_initializer='glorot_uniform', recurrent_initializer='orthogonal', bias_initializer='zeros', unit_forget_bias=True, kernel_regularizer=None, recurrent_regularizer=None, bias_regularizer=None, activity_regularizer=None, kernel_constraint=None, recurrent_constraint=None, bias_constraint=None, return_sequences=False, go_backwards=False, stateful=False, dropout=0.0, recurrent_dropout=0.0. Leave blank for default."/> |
0
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
554 <yield/> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
555 </xml> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
556 |
1
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
parents:
0
diff
changeset
|
557 <xml name="layer_ConvLSTM2DCell"> |
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
parents:
0
diff
changeset
|
558 <param argument="filters" type="integer" value="" min="0" help="the dimensionality of the output space (i.e. the number of output filters in the convolution)."/> |
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
parents:
0
diff
changeset
|
559 <param argument="kernel_size" type="text" value="" help="An integer or tuple/list of n integers, specifying the dimensions of the convolution window."/> |
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
parents:
0
diff
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|
560 <expand macro="simple_kwargs" help="For example: strides=(1, 1), padding='valid', data_format=None, dilation_rate=(1, 1), activation='tanh', recurrent_activation='hard_sigmoid', use_bias=True, kernel_initializer='glorot_uniform', recurrent_initializer='orthogonal', bias_initializer='zeros', unit_forget_bias=True, kernel_regularizer=None, recurrent_regularizer=None, bias_regularizer=None, kernel_constraint=None, recurrent_constraint=None, bias_constraint=None, dropout=0.0, recurrent_dropout=0.0. Leave blank for default."/> |
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
parents:
0
diff
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|
561 <yield/> |
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
parents:
0
diff
changeset
|
562 </xml> |
0
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
563 |
1
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
parents:
0
diff
changeset
|
564 <xml name="layer_SimpleRNNCell"> |
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
parents:
0
diff
changeset
|
565 <param argument="units" type="integer" value="" min="1" help="Positive integer, dimensionality of the output space."/> |
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
parents:
0
diff
changeset
|
566 <expand macro="simple_kwargs" help="For example: activation='tanh', use_bias=True, kernel_initializer='glorot_uniform', recurrent_initializer='orthogonal', bias_initializer='zeros', kernel_regularizer=None, recurrent_regularizer=None, bias_regularizer=None, kernel_constraint=None, recurrent_constraint=None, bias_constraint=None, dropout=0.0, recurrent_dropout=0.0. Leave blank for default."/> |
0
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
567 <yield/> |
1
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
parents:
0
diff
changeset
|
568 </xml> |
0
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
569 |
1
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
parents:
0
diff
changeset
|
570 <xml name="layer_GRUCell"> |
0
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
571 <param argument="units" type="integer" value="" min="1" help="Positive integer, dimensionality of the output space."/> |
1
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
parents:
0
diff
changeset
|
572 <expand macro="simple_kwargs" help="For example: activation='tanh', recurrent_activation='hard_sigmoid', use_bias=True, kernel_initializer='glorot_uniform', recurrent_initializer='orthogonal', bias_initializer='zeros', kernel_regularizer=None, recurrent_regularizer=None, bias_regularizer=None, kernel_constraint=None, recurrent_constraint=None, bias_constraint=None, dropout=0.0, recurrent_dropout=0.0, implementation=1, reset_after=False. Leave blank for default."/> |
0
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
573 <yield/> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
574 </xml> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
575 |
1
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
parents:
0
diff
changeset
|
576 <xml name="layer_LSTMCell"> |
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
parents:
0
diff
changeset
|
577 <param argument="units" type="integer" value="" min="1" help="Positive integer, dimensionality of the output space."/> |
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
parents:
0
diff
changeset
|
578 <expand macro="simple_kwargs" help="For example: activation='tanh', recurrent_activation='hard_sigmoid', use_bias=True, kernel_initializer='glorot_uniform', recurrent_initializer='orthogonal', bias_initializer='zeros', unit_forget_bias=True, kernel_regularizer=None, recurrent_regularizer=None, bias_regularizer=None, kernel_constraint=None, recurrent_constraint=None, bias_constraint=None, dropout=0.0, recurrent_dropout=0.0, implementation=1. Leave blank for default."/> |
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
parents:
0
diff
changeset
|
579 <yield/> |
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
parents:
0
diff
changeset
|
580 </xml> |
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
parents:
0
diff
changeset
|
581 |
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
parents:
0
diff
changeset
|
582 <xml name="layer_CuDNNGRU"> |
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
parents:
0
diff
changeset
|
583 <param argument="units" type="integer" value="" min="1" help="Positive integer, dimensionality of the output space."/> |
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
parents:
0
diff
changeset
|
584 <expand macro="simple_kwargs" help="For example: kernel_initializer='glorot_uniform', recurrent_initializer='orthogonal', bias_initializer='zeros', kernel_regularizer=None, recurrent_regularizer=None, bias_regularizer=None, activity_regularizer=None, kernel_constraint=None, recurrent_constraint=None, bias_constraint=None, return_sequences=False, return_state=False, stateful=False. Leave blank for default."/> |
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
parents:
0
diff
changeset
|
585 <yield/> |
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
parents:
0
diff
changeset
|
586 </xml> |
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
parents:
0
diff
changeset
|
587 |
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
parents:
0
diff
changeset
|
588 <xml name="layer_CuDNNLSTM"> |
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
parents:
0
diff
changeset
|
589 <param argument="units" type="integer" value="" min="1" help="Positive integer, dimensionality of the output space."/> |
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
parents:
0
diff
changeset
|
590 <expand macro="simple_kwargs" help="For example: kernel_initializer='glorot_uniform', recurrent_initializer='orthogonal', bias_initializer='zeros', unit_forget_bias=True, kernel_regularizer=None, recurrent_regularizer=None, bias_regularizer=None, activity_regularizer=None, kernel_constraint=None, recurrent_constraint=None, bias_constraint=None, return_sequences=False, return_state=False, stateful=False. Leave blank for default."/> |
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
parents:
0
diff
changeset
|
591 <yield/> |
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
parents:
0
diff
changeset
|
592 </xml> |
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
parents:
0
diff
changeset
|
593 |
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
parents:
0
diff
changeset
|
594 |
0
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
595 <!--Embedding Layers--> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
596 |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
597 <xml name="layer_Embedding"> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
598 <param argument="input_dim" type="integer" value="" min="0" help="int > 0. Size of the vocabulary, i.e. maximum integer index + 1."/> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
599 <param argument="output_dim" type="integer" value="" min="0" help="int >= 0. Dimension of the dense embedding."/> |
1
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
parents:
0
diff
changeset
|
600 <expand macro="simple_kwargs" help="For example: embeddings_initializer='uniform', embeddings_regularizer=None, activity_regularizer=None, embeddings_constraint=None, mask_zero=False, input_length=None. Leave blank for default."/> |
0
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
601 <yield/> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
602 </xml> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
603 |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
604 <!--Merge Layers--> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
605 |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
606 <xml name="layer_merge"> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
607 <param name="merging_layers" type="text" value="[ ]" label="Type the layer index numbers in a list" help="List of numbers"> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
608 <sanitizer> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
609 <valid initial="default"> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
610 <add value="["/> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
611 <add value="]"/> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
612 </valid> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
613 </sanitizer> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
614 </param> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
615 <yield/> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
616 </xml> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
617 |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
618 <xml name="layer_Concatenate" token_type="integer" token_default_value="-1" token_help="Axis along which to concatenate."> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
619 <expand macro="layer_merge"> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
620 <param argument="axis" type="@TYPE@" value="@DEFAULT_VALUE@" help="@HELP@"/> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
621 </expand> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
622 <yield/> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
623 </xml> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
624 |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
625 <xml name="layer_Dot"> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
626 <expand macro="layer_Concatenate" type="text" default_value="" help="Integer or tuple of integers, axis or axes along which to take the dot product."> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
627 <param argument="normalize" type="boolean" truevalue="booltrue" falsevalue="boolfalse" optional="true" checked="false" label="Whether to L2-normalize samples along the dot product axis before taking the dot product?"/> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
628 </expand> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
629 <yield/> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
630 </xml> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
631 |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
632 <!--Advanced Activations Layers--> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
633 |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
634 <xml name="layer_LeakyReLU"> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
635 <param argument="alpha" type="float" value="0.3" min="0." help="float >= 0. Negative slope coefficient."/> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
636 <yield/> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
637 </xml> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
638 |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
639 <xml name="layer_PReLU"> |
1
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
parents:
0
diff
changeset
|
640 <expand macro="keras_initializers" argument="alpha_initializer" default_zeros="true"/> |
0
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
641 <expand macro="keras_regularizers" argument="alpha_regularizer"/> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
642 <expand macro="keras_constraints" argument="alpha_constraint"/> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
643 <param argument="shared_axes" type="text" value="" help="the axes along which to share learnable parameters for the activation function. E.g. [1, 2]"> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
644 <sanitizer> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
645 <valid initial="default"> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
646 <add value="["/> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
647 <add value="]"/> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
648 </valid> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
649 </sanitizer> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
650 </param> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
651 <yield/> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
652 </xml> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
653 |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
654 <xml name="layer_ELU"> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
655 <param argument="alpha" type="float" value="1.0" help="scale for the negative factor."/> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
656 <yield/> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
657 </xml> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
658 |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
659 <xml name="layer_ThresholdedReLU"> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
660 <param argument="theta" type="float" value="1.0" help="float >= 0. Threshold location of activation."/> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
661 <yield/> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
662 </xml> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
663 |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
664 <xml name="layer_Softmax"> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
665 <param argument="axis" type="integer" value="-1" help="Integer, axis along which the softmax normalization is applied."/> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
666 <yield/> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
667 </xml> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
668 |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
669 <xml name="layer_ReLU"> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
670 <param argument="max_value" type="float" value="" min="0." help="float >= 0. Maximum activation value."/> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
671 <param argument="negative_slope" type="float" value="0." min="0." help="float >= 0. Negative slope coefficient."/> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
672 <param argument="max_value" type="float" value="0." help="float. Threshold value for thresholded activation."/> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
673 <yield/> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
674 </xml> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
675 |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
676 <!--Normalization Layers--> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
677 |
1
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
parents:
0
diff
changeset
|
678 <xml name="layer_BatchNormalization"> |
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
parents:
0
diff
changeset
|
679 <expand macro="simple_kwargs" help="For example: axis=-1, momentum=0.99, epsilon=0.001, center=True, scale=True, beta_initializer='zeros', gamma_initializer='ones', moving_mean_initializer='zeros', moving_variance_initializer='ones', beta_regularizer=None, gamma_regularizer=None, beta_constraint=None, gamma_constraint=None. Leave blank for default."/> |
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
parents:
0
diff
changeset
|
680 </xml> |
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
parents:
0
diff
changeset
|
681 |
0
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
682 <!--Noise layers--> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
683 |
1
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
parents:
0
diff
changeset
|
684 <xml name="layer_GaussianNoise"> |
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
parents:
0
diff
changeset
|
685 <param argument="stddev" type="float" value="" help="float, standard deviation of the noise distribution."/> |
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
parents:
0
diff
changeset
|
686 </xml> |
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
parents:
0
diff
changeset
|
687 |
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
parents:
0
diff
changeset
|
688 <xml name="layer_GaussianDropout"> |
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
parents:
0
diff
changeset
|
689 <param argument="rate" type="float" value="" help="drop probability, (as with `Dropout`). The multiplicative noise will have standard deviation `sqrt(rate / (1 - rate))`"/> |
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
parents:
0
diff
changeset
|
690 </xml> |
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
parents:
0
diff
changeset
|
691 |
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
parents:
0
diff
changeset
|
692 <xml name="layer_AlphaDropout"> |
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
parents:
0
diff
changeset
|
693 <expand macro="layer_Dropout"/> |
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
parents:
0
diff
changeset
|
694 </xml> |
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
parents:
0
diff
changeset
|
695 |
0
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
696 <xml name="inbound_nodes_index"> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
697 <param name="inbound_nodes" type="integer" value="" label="Type the index number of input layer" |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
698 help="Find the index number at the left top corner of layer configuration block"/> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
699 </xml> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
700 |
1
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
parents:
0
diff
changeset
|
701 <!--Simple key words text parameters, conbined to reduce UI latency--> |
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
parents:
0
diff
changeset
|
702 |
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
parents:
0
diff
changeset
|
703 <xml name="simple_kwargs" token_help="Leave blank for default."> |
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
parents:
0
diff
changeset
|
704 <param argument="kwargs" type="text" value="" label="Type in key words arguments if different from the default" help="@HELP@"/> |
5e024ca380dd
"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit ba6a47bdf76bbf4cb276206ac1a8cbf61332fd16"
bgruening
parents:
0
diff
changeset
|
705 </xml> |
0
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
706 |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
707 <!-- Keras CallBacks --> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
708 |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
709 <xml name="keras_callbacks"> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
710 <repeat name="callbacks" min="1" max="5" title="callback"> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
711 <conditional name="callback_selection"> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
712 <param name="callback_type" type="select" label="Choose a callback"> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
713 <option value="None" selected="true">None</option> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
714 <option value="EarlyStopping">EarlyStopping -- Stop training when a monitored quantity has stopped improving</option> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
715 <!--option value="KerasTensorBoard">TensorBoard</option--> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
716 <!--option value="KerasLearningRateScheduler">LearningRateScheduler</option--> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
717 <!--option value="RemoteMonitor">RemoteMonitor - Stream events to a server</option> --> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
718 <!--option value="ModelCheckpoint">ModelCheckpoint - Save the model after every epoch</option>--> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
719 <option value="TerminateOnNaN">TerminateOnNaN -- Terminates training when a NaN loss is encountered.</option> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
720 <option value="ReduceLROnPlateau">ReduceLROnPlateau -- Reduce learning rate when a metric has stopped improving</option> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
721 <option value="CSVLogger">CSVLogger -- Streams epoch results to a csv file</option> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
722 </param> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
723 <when value="None"/> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
724 <when value="EarlyStopping"> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
725 <expand macro="keras_callback_common_options"> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
726 <param argument="min_delta" type="float" value="0" optional="true" help="Minimum change in the monitored quantity to qualify as an improvement."/> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
727 <param argument="patience" type="integer" value="0" min="0" help="Number of epochs with no improvement after which training will be stopped."/> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
728 <param argument="baseline" type="float" value="" optional="true" help="Baseline value for the monitored quantity to reach. Training will stop if the model doesn't show improvement over the baseline."/> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
729 <param argument="restore_best_weights" type="boolean" truevalue="booltrue" falsevalue="boolfalse" checked="false" help="Whether to restore model weights from the epoch with the best value of the monitored quantity"/> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
730 </expand> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
731 </when> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
732 <!--when value="TensorBoard"> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
733 <param argument="histogram_freq" /> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
734 <param argument="batch_size" /> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
735 <param argument="write_graph" /> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
736 <param argument="write_grads" /> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
737 <param argument="write_images" /> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
738 <param argument="embeddings_layer_names" /> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
739 <param argument="embeddings_metadata" /> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
740 <param argument="embeddings_data" /> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
741 <param argument="update_freq" /> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
742 </when--> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
743 <!--when value="RemoteMonitor"> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
744 <param argument="root" type="text" value="http://localhost:9000" help="Root url of the target server."/> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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745 <param argument="path" type="text" value="/publish/epoch/end/" help="Path relative to root to which the events will be sent. E.g., root + '/publish/epoch/end/'"/> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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746 <param argument="field" type="text" value="data" optional="true" help="JSON field under which the data will be stored. The field is used only if the payload is sent within a form (i.e. send_as_json is set to False)."/> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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|
747 <param argument="headers" type="text" value="" optional="true" help="Dictionary; optional custom HTTP headers."> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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|
748 <sanitizer> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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749 <valid initial="default"> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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750 <add value="{"/> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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|
751 <add value="}"/> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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|
752 </valid> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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|
753 </sanitizer> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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|
754 </param> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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755 <param argument="send_as_json" type="boolean" truevalue="booltrue" falsevalue="boolfalse" checked="false" help="Whether the request should be send as application/json."/> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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|
756 </when> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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|
757 <when value="ModelCheckpoint"> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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758 <expand macro="keras_callback_common_options"> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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|
759 <param argument="save_best_only" type="boolean" truevalue="booltrue" falsevalue="boolfalse" checked="false" help="If True, the latest best model according to the quantity monitored will not be overwritten."/> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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760 <param argument="save_weights_only" type="boolean" truevalue="booltrue" falsevalue="boolfalse" checked="true" help="If True, then only the model's weights will be saved, else the full model is saved."/> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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changeset
|
761 <param argument="period" type="integer" value="1" min="1" help="Interval (number of epochs) between checkpoints."/> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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|
762 </expand> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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|
763 </when>--> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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764 <when value="TerminateOnNaN"/> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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|
765 <when value="ReduceLROnPlateau"> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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766 <expand macro="keras_callback_common_options"> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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|
767 <param argument="factor" type="float" value="0.1" help="Factor by which the learning rate will be reduced. new_lr = lr * factor"/> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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768 <param argument="patience" type="integer" value="10" help="Number of epochs with no improvement after which learning rate will be reduced."/> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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769 <param argument="min_delta" type="float" value="0.0001" help="Threshold for measuring the new optimum, to only focus on significant changes."/> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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770 <param argument="cooldown" type="integer" value="0" help="Number of epochs to wait before resuming normal operation after lr has been reduced."/> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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|
771 <param argument="min_lr" type="float" value="0" help="Lower bound on the learning rate."/> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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|
772 </expand> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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773 </when> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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|
774 <when value="CSVLogger"/> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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|
775 </conditional> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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776 </repeat> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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|
777 </xml> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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changeset
|
778 |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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|
779 <xml name="keras_callback_common_options"> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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780 <param argument="monitor" type="select" help="Quantity to be monitored."> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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781 <option value="val_loss" selected="true">val_loss</option> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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782 <option value="loss">loss</option> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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783 </param> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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784 <param argument="mode" type="select"> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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785 <option value="auto" selected="true">auto -- the direction is automatically inferred from the name of the monitored quantity</option> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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786 <option value="min">min -- training will stop when the quantity monitored has stopped decreasing</option> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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787 <option value="max">max -- training will stop when the quantity monitored has stopped increasing</option> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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788 </param> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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789 <yield/> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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790 </xml> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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791 |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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792 <!--Batch online data generators--> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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793 |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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794 <xml name="params_fasta_dna_batch_generator"> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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795 <param argument="seq_length" type="integer" value="1000" optional="true" help="Integer. Sequence length or number of bases."/> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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796 <param argument="shuffle" type="boolean" truevalue="booltrue" falsevalue="boolfalse" optional="true" checked="true" help="Whether to shuffle the data between epochs."/> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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|
797 <param argument="seed" type="integer" value="" optional="true" help="Integer, random seed for data shuffling"/> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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798 </xml> |
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799 |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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800 <xml name="params_fasta_protein_batch_generator"> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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801 <expand macro="params_fasta_dna_batch_generator"/> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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802 </xml> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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803 |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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804 <xml name="params_genomic_interval_batch_generator"> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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805 <expand macro="params_fasta_dna_batch_generator"/> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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806 <param argument="blacklist_regions" type="select" help="Tabix-indexed list of regions from which we should not output sequences"> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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807 <option value="hg38" selected="true">hg38</option> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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808 <option value="hg19">hg19</option> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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809 </param> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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810 <param argument="center_bin_to_predict" type="integer" value="200" optional="true" help="Query the tabix-indexed file for a region of length."/> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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changeset
|
811 <param argument="feature_thresholds" type="float" value="0.5" optional="true" help="Threshold values to determine target value."/> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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|
812 <param argument="random_state" type="integer" value="" optional="true" help="Random seed number, to control the sample position in each invertal."/> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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|
813 </xml> |
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|
814 |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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|
815 <xml name="params_image_batch_generator"> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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816 </xml> |
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|
817 |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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818 |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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819 <!--composite params macro--> |
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820 |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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821 <xml name="keras_compile_params_section"> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff
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822 <section name="compile_params" title="Compile Parameters" expanded="true"> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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823 <param name="loss" type="select" label="Select a loss function"> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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824 <option value="binary_crossentropy" selected="true">binary_crossentropy</option> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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|
825 <option value="mean_squared_error">mse / MSE/ mean_squared_error</option> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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|
826 <option value="mean_absolute_error">mae / MAE / mean_absolute_error</option> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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827 <option value="mean_absolute_percentage_error">mape / MAPE / mean_absolute_percentage_error</option> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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828 <option value="mean_squared_logarithmic_error">msle / MSLE / mean_squared_logarithmic_error</option> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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829 <option value="squared_hinge">squared_hinge</option> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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830 <option value="hinge">hinge</option> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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831 <option value="categorical_hinge">categorical_hinge</option> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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832 <option value="logcosh">logcosh</option> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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833 <option value="categorical_crossentropy">categorical_crossentropy</option> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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834 <option value="sparse_categorical_crossentropy">sparse_categorical_crossentropy</option> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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835 <option value="kullback_leibler_divergence">kld / KLD / kullback_leibler_divergence</option> |
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836 <option value="poisson">poisson</option> |
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837 <option value="cosine_proximity">cosine / cosine_proximity</option> |
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838 </param> |
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839 <conditional name="optimizer_selection"> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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840 <param name="optimizer_type" type="select" label="Select an optimizer"> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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841 <option value="SGD" selected="true">SGD - Stochastic gradient descent optimizer </option> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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842 <option value="RMSprop">RMSprop - RMSProp optimizer </option> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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843 <option value="Adagrad">Adagrad - Adagrad optimizer </option> |
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844 <option value="Adadelta">Adadelta - Adadelta optimizer </option> |
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845 <option value="Adam">Adam - Adam optimizer </option> |
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846 <option value="Adamax">Adamax - A variant of Adam based on the infinity norm </option> |
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847 <option value="Nadam">Nadam - Nesterov Adam optimizer </option> |
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848 </param> |
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849 <when value="SGD"> |
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850 <expand macro="keras_optimizer_common"> |
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851 <param argument="momentum" type="float" value="0" optional="true" label="Momentum" |
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852 help="float >= 0. Parameter that accelerates SGD in the relevant direction and dampens oscillations."/> |
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853 <param argument="decay" type="float" value="0" label="Decay" optional="true" help="float >= 0. Learning rate decay over each update."/> |
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854 <param argument="nesterov" type="boolean" truevalue="booltrue" falsevalue="boolfalse" optional="true" checked="false" label="Whether to apply Nesterov momentum"/> |
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855 </expand> |
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856 </when> |
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857 <when value="RMSprop"> |
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858 <expand macro="keras_optimizer_common_more" lr="0.001"> |
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859 <param argument="rho" type="float" value="0.9" optional="true" label="rho" help="float >= 0."/> |
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860 </expand> |
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861 </when> |
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862 <when value="Adagrad"> |
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863 <expand macro="keras_optimizer_common_more" lr="0.001"/> |
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864 </when> |
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865 <when value="Adadelta"> |
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866 <expand macro="keras_optimizer_common_more" lr="1.0"> |
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867 <param argument="rho" type="float" value="0.95" optional="true" label="rho" help="float >= 0."/> |
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868 </expand> |
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869 </when> |
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870 <when value="Adam"> |
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871 <expand macro="keras_optimizer_common_more" lr="0.001"> |
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872 <param argument="beta_1" type="float" value="0.9" optional="true" label="beta_1" help="float, 0 < beta < 1. Generally close to 1."/> |
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873 <param argument="beta_2" type="float" value="0.999" optional="true" label="beta_2" help="float, 0 < beta < 1. Generally close to 1."/> |
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874 <param argument="amsgrad" type="boolean" truevalue="booltrue" falsevalue="boolfalse" optional="true" checked="false" label="Whether to apply the AMSGrad variant?" |
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875 help="Refer to paper `On the Convergence of Adam and Beyond`"/> |
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876 </expand> |
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877 </when> |
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878 <when value="Adamax"> |
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879 <expand macro="keras_optimizer_common_more" lr="0.002"> |
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880 <param argument="beta_1" type="float" value="0.9" optional="true" label="beta_1" help="float, 0 < beta < 1. Generally close to 1."/> |
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881 <param argument="beta_2" type="float" value="0.999" optional="true" label="beta_2" help="float, 0 < beta < 1. Generally close to 1."/> |
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882 </expand> |
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883 </when> |
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884 <when value="Nadam"> |
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885 <expand macro="keras_optimizer_common" lr="0.002"> |
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886 <param argument="beta_1" type="float" value="0.9" optional="true" label="beta_1" help="float, 0 < beta < 1. Generally close to 1."/> |
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887 <param argument="beta_2" type="float" value="0.999" optional="true" label="beta_2" help="float, 0 < beta < 1. Generally close to 1."/> |
5
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"planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 5b2ac730ec6d3b762faa9034eddd19ad1b347476"
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888 <!--param argument="epsilon" type="float" value="" label="epsilon" optional="true" help="Fuzz factor. If `None`, defaults to `K.epsilon()`"/>--> |
0
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889 <param argument="schedule_decay" type="float" value="0.004" optional="true" label="schedule_decay" help="float, 0 < beta < 1."/> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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890 </expand> |
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parents:
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changeset
|
891 </when> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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|
892 </conditional> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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|
893 <param name="metrics" type="select" optional="true" multiple="true" label="Select metrics"> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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|
894 <option value="acc" selected="true">acc / accruracy</option> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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|
895 <option value="binary_accuracy">binary_accuracy</option> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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|
896 <option value="categorical_accuracy">categorical_accuracy</option> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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|
897 <option value="sparse_categorical_accuracy">sparse_categorical_accuracy</option> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff
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|
898 <option value="mse">mse / MSE / mean_squared_error</option> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff
changeset
|
899 <option value="mae">mae / MAE / mean_absolute_error</option> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff
changeset
|
900 <option value="mae">mape / MAPE / mean_absolute_percentage_error</option> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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changeset
|
901 <option value="cosine_proximity">cosine_proximity</option> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff
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|
902 <option value="cosine">cosine</option> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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|
903 <option value="none">none</option> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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|
904 </param> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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changeset
|
905 </section> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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|
906 </xml> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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|
907 |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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|
908 <xml name="keras_fit_params_section"> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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|
909 <section name="fit_params" title="Fit Parameters" expanded="true"> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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|
910 <param name="epochs" type="integer" value="1" min="1" label="epochs"/> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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|
911 <param name="batch_size" type="integer" value="32" optional="true" label="batch_size" help="Integer or blank for 32"/> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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|
912 <param name="steps_per_epoch" type="integer" value="" optional="true" label="steps_per_epoch" help="The number of steps (batches of samples) before declaring one epoch finished and starting the next epoch. The default None is equal to the number of samples in your dataset divided by the batch size, or 1 if that cannot be determined."/> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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|
913 <param name="validation_steps" type="integer" value="" optional="true" label="validation_steps" help="Default None. Total number of steps (batches of samples) to validate before stopping." /> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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|
914 <!--`validation_freq` will be available in next keras version--> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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|
915 <!--param name="validation_freq" type="integer" value="1" optional="true" label="validation_freq" help="Integer only at current moment. If an integer, specifies how many training epochs to run before a new validation run is performed."/--> |
f59a4f7c47f9
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parents:
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changeset
|
916 <expand macro="keras_callbacks"/> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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|
917 </section> |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff
changeset
|
918 </xml> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff
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|
919 |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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changeset
|
920 <!--Citation--> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff
changeset
|
921 <xml name="keras_citation"> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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changeset
|
922 <citation type="bibtex"> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff
changeset
|
923 @misc{chollet2015keras, |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff
changeset
|
924 title={Keras}, |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff
changeset
|
925 url={https://keras.io}, |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff
changeset
|
926 author={Chollet, Fran\c{c}ois and others}, |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff
changeset
|
927 year={2015}, |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff
changeset
|
928 howpublished={https://keras.io}, |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff
changeset
|
929 } |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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|
930 </citation> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff
changeset
|
931 </xml> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff
changeset
|
932 |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff
changeset
|
933 <xml name="tensorflow_citation"> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff
changeset
|
934 <citation type="bibtex"> |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff
changeset
|
935 @misc{tensorflow2015-whitepaper, |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
936 title={ {TensorFlow}: Large-Scale Machine Learning on Heterogeneous Systems}, |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
937 url={https://www.tensorflow.org/}, |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff
changeset
|
938 note={Software available from tensorflow.org}, |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff
changeset
|
939 author={ |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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changeset
|
940 Mart\'{\i}n~Abadi and |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
941 Ashish~Agarwal and |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
942 Paul~Barham and |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff
changeset
|
943 Eugene~Brevdo and |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
944 Zhifeng~Chen and |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
945 Craig~Citro and |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
946 Greg~S.~Corrado and |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff
changeset
|
947 Andy~Davis and |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
948 Jeffrey~Dean and |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
949 Matthieu~Devin and |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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changeset
|
950 Sanjay~Ghemawat and |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff
changeset
|
951 Ian~Goodfellow and |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff
changeset
|
952 Andrew~Harp and |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff
changeset
|
953 Geoffrey~Irving and |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
954 Michael~Isard and |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff
changeset
|
955 Yangqing Jia and |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff
changeset
|
956 Rafal~Jozefowicz and |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff
changeset
|
957 Lukasz~Kaiser and |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
958 Manjunath~Kudlur and |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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changeset
|
959 Josh~Levenberg and |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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changeset
|
960 Dandelion~Man\'{e} and |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff
changeset
|
961 Rajat~Monga and |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff
changeset
|
962 Sherry~Moore and |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
diff
changeset
|
963 Derek~Murray and |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
964 Chris~Olah and |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
diff
changeset
|
965 Mike~Schuster and |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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parents:
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changeset
|
966 Jonathon~Shlens and |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
bgruening
parents:
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|
967 Benoit~Steiner and |
f59a4f7c47f9
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968 Ilya~Sutskever and |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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969 Kunal~Talwar and |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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970 Paul~Tucker and |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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971 Vincent~Vanhoucke and |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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972 Vijay~Vasudevan and |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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973 Fernanda~Vi\'{e}gas and |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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974 Oriol~Vinyals and |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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975 Pete~Warden and |
f59a4f7c47f9
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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976 Martin~Wattenberg and |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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977 Martin~Wicke and |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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978 Yuan~Yu and |
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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/sklearn commit 60f0fbc0eafd7c11bc60fb6c77f2937782efd8a9-dirty
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979 Xiaoqiang~Zheng}, |
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980 year={2015}, |
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981 } |
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982 </citation> |
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983 </xml> |
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984 |
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985 </macros> |