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comparison json2yolosegment.xml @ 4:f6990d85161c draft default tip

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools commit c6c9d43a4ecdc88ebdeaf3451453a550f159c506
author bgruening
date Mon, 21 Jul 2025 15:51:13 +0000
parents dfda27273ead
children
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3:97bc82ee2a61 4:f6990d85161c
6 <expand macro="creator" /> 6 <expand macro="creator" />
7 <expand macro="edam" /> 7 <expand macro="edam" />
8 <expand macro="requirements" /> 8 <expand macro="requirements" />
9 <command detect_errors="aggressive"> 9 <command detect_errors="aggressive">
10 <![CDATA[ 10 <![CDATA[
11 mkdir ./input ./output && 11 mkdir ./input ./output &&
12 12
13 #for $filename in $in_json: 13 #for $filename in $in_json:
14 #if $filename.element_identifier.endswith($filename.ext) 14 #if $filename.element_identifier.endswith($filename.ext)
15 ln -s '$filename' './input/${filename.element_identifier}' && 15 ln -s '$filename' './input/${filename.element_identifier}' &&
16 #else: 16 #else:
17 ln -s '$filename' './input/${filename.element_identifier}.${filename.ext}' && 17 ln -s '$filename' './input/${filename.element_identifier}.${filename.ext}' &&
18 #end if 18 #end if
19 #end for 19 #end for
20 20
21 python '$__tool_directory__/json2yolosegment.py' 21 python '$__tool_directory__/json2yolosegment.py'
22 -i ./input/ 22 -i ./input/
23 -o ./output 23 -o ./output
24 -c '$class_name' 24 -c '$class_name'
25 25
26 ]]> 26 ]]>
27 </command> 27 </command>
28 <inputs> 28 <inputs>
29 <param name="in_json" type="data" format="json" multiple="true" label="Input label files" help="The label file is the output of AnyLabeling in JSON format."/> 29 <param name="in_json" type="data" format="json" multiple="true" label="Input label files" help="The label file is the output of AnyLabeling in JSON format."/>
30 <param name="class_name" type="data" format="txt" label="Class file" help="Class names text file, contains the names of classes, one class per row."/> 30 <param name="class_name" type="data" format="txt" label="Class file" help="Class names text file, contains the names of classes, one class per row."/>
31 </inputs> 31 </inputs>
32 <outputs> 32 <outputs>
33 <collection name="output_yolo" type="list" label="YOLO text files"> 33 <collection name="output_yolo" type="list" label="YOLO text files">
34 <discover_datasets pattern="(?P&lt;name&gt;.+)\.txt" visible="true" directory="./output" format="txt"/> 34 <discover_datasets pattern="(?P&lt;designation&gt;.+)\.txt" directory="./output" format="txt"/>
35 </collection> 35 </collection>
36 </outputs> 36 </outputs>
37 <tests> 37 <tests>
38 <test> 38 <test>
39 <param name="in_json" value="in_json.json,in_json1.json" /> 39 <param name="in_json" value="in_json.json,in_json1.json" />
40 <param name="class_name" value="class_names.txt" /> 40 <param name="class_name" value="class_names.txt" />
41 <output_collection name="output_yolo"> 41 <output_collection name="output_yolo">
42 <element name="in_json"> 42 <element name="in_json">
43 <assert_contents> 43 <assert_contents>
44 <has_n_lines n="1" /> 44 <has_n_lines n="1" />
45 <has_text text="0.8532289628180039" /> 45 <has_text text="0.8532289628180039" />
46 </assert_contents> 46 </assert_contents>
47 </element> 47 </element>
48 <element name="in_json1"> 48 <element name="in_json1">
49 <assert_contents> 49 <assert_contents>
50 <has_n_lines n="1" /> 50 <has_n_lines n="1" />
51 <has_text text="0.7710371819960861" /> 51 <has_text text="0.7710371819960861" />
52 </assert_contents> 52 </assert_contents>
53 </element> 53 </element>
54 </output_collection> 54 </output_collection>
55 </test> 55 </test>
56 <test> 56 <test>
57 <param name="in_json" value="in_json_noext,in_json1_noext" /> 57 <param name="in_json" value="in_json_noext,in_json1_noext" />
58 <param name="class_name" value="class_names.txt" /> 58 <param name="class_name" value="class_names.txt" />
59 <output_collection name="output_yolo"> 59 <output_collection name="output_yolo">
60 <element name="in_json1_noext"> 60 <element name="in_json1_noext">
61 <assert_contents> 61 <assert_contents>
62 <has_n_lines n="1" /> 62 <has_n_lines n="1" />
63 <has_text text="0.7710371819960861" /> 63 <has_text text="0.7710371819960861" />
64 </assert_contents> 64 </assert_contents>