Mercurial > repos > bgruening > interproscan5
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| author | bgruening |
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| date | Thu, 22 Aug 2013 08:07:13 -0400 |
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| children | 2d56d3ae499c |
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================================================ Galaxy wrapper for InterProScan prediction tools ================================================ InterProScan is a tool that combines different protein signature recognition methods native to the InterPro member databases into one resource with look up of corresponding InterPro and GO annotation. This wrapper is copyright 2013 by: * Bjoern Gruening * Konrad Paszkiewicz This prepository contains wrapper for the InterProScan_ command line tool. .. _InterProScan: http://www.ebi.ac.uk/interpro/ Zdobnov E.M. and Apweiler R. "InterProScan - an integration platform for the signature-recognition methods in InterPro" Bioinformatics, 2001, 17(9): p. 847-8. ============ Installation ============ Please download install InterProScan according to: https://code.google.com/p/interproscan/wiki/i5RC7HowToObtainingACopy ============= Input formats ============= The standard interproscan input is either genomic or protein sequences. In the case of genomic sequences Interproscan will run an ORF prediction tool. ======= History ======= interproscan: - v5.0: Initial public release of version 5.0 =============================== Wrapper Licence (MIT/BSD style) =============================== Permission to use, copy, modify, and distribute this software and its documentation with or without modifications and for any purpose and without fee is hereby granted, provided that any copyright notices appear in all copies and that both those copyright notices and this permission notice appear in supporting documentation, and that the names of the contributors or copyright holders not be used in advertising or publicity pertaining to distribution of the software without specific prior permission. THE CONTRIBUTORS AND COPYRIGHT HOLDERS OF THIS SOFTWARE DISCLAIM ALL WARRANTIES WITH REGARD TO THIS SOFTWARE, INCLUDING ALL IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS, IN NO EVENT SHALL THE CONTRIBUTORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY SPECIAL, INDIRECT OR CONSEQUENTIAL DAMAGES OR ANY DAMAGES WHATSOEVER RESULTING FROM LOSS OF USE, DATA OR PROFITS, WHETHER IN AN ACTION OF CONTRACT, NEGLIGENCE OR OTHER TORTIOUS ACTION, ARISING OUT OF OR IN CONNECTION WITH THE USE OR PERFORMANCE OF THIS SOFTWARE.