diff cmsearch.xml @ 11:5c6344f67ad0 draft

Uploaded

--- a/cmsearch.xml	Sun Sep 08 05:08:20 2013 -0400
+++ b/cmsearch.xml	Sun Sep 08 06:48:18 2013 -0400
@@ -30,21 +30,21 @@
                 $A $multiple_alignment_output
             #end if
 
-            #if $inclusion_thresholds_opts.inclusion_thresholds_selector == "--incE":
+            #if str($inclusion_thresholds_opts.inclusion_thresholds_selector) == "--incE":
                 --incE $inclusion_thresholds_opts.incE
-            #elif $inclusion_thresholds_opts.inclusion_thresholds_selector == "--incT":
+            #elif str($inclusion_thresholds_opts.inclusion_thresholds_selector) == "--incT":
                 --incT $inclusion_thresholds_opts.incT
             #end if
 
-            #if $reporting_thresholds_opts.reporting_thresholds_selector == "-E":
+            #if str($reporting_thresholds_opts.reporting_thresholds_selector) == "-E":
                 -E $reporting_thresholds_opts.E
-            #elif $reporting_thresholds_opts.reporting_thresholds_selector == "-T":
+            #elif str($reporting_thresholds_opts.reporting_thresholds_selector) == "-T":
                 -T $reporting_thresholds_opts.T
             #end if
 
             ## CM file from the history or stored as database on disc
 
-            #if $cm_opts.cm_opts_selector == "db":
+            #if str($cm_opts.cm_opts_selector) == "db":
                 $cm_opts.database.fields.path
             #else:
                 $cm_opts.cmfile