diff imagej2_bunwarpj_elastic_transform_jython_script.py @ 0:5c1467b54342 draft default tip

planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/image_processing/imagej2 commit b'7e5cd452018ae9507c2d1cd13dd688a747550393\n'

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/imagej2_bunwarpj_elastic_transform_jython_script.py	Sat Mar 18 09:42:41 2017 -0400
@@ -0,0 +1,16 @@
+import sys
+import jython_utils
+from ij import IJ
+
+# Fiji Jython interpreter implements Python 2.5 which does not
+# provide support for argparse.
+
+source_tiff_path = sys.argv[ -3 ]
+source_datatype = sys.argv[ -2 ]
+source_path = sys.argv[ -1 ]
+
+# Save the Registered Source Image.
+registered_source_image = IJ.openImage( source_tiff_path )
+if source_datatype == 'tiff':
+    registered_source_image = jython_utils.convert_before_saving_as_tiff( registered_source_image )
+IJ.saveAs( registered_source_image, source_datatype, source_path )