Mercurial > repos > bgruening > hicup_truncater

annotate test-data/dataset.invalid.filter.sam @ 3:b3276d3a4839 draft

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planemo upload for repository https://github.com/joachimwolff/galaxytools/tree/hicup/tools/hicup commit e6a9507eb198c6bf2c63ddae387c262bfc8dbd16
author bgruening
date Thu, 09 Nov 2017 11:14:43 -0500
parents 28b31baf8315
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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28b31baf8315 planemo upload for repository https://github.com/joachimwolff/galaxytools/tree/hicup/tools/hicup commit b77cbc104261f8aa1524922f41c2a9a23052f5da
bgruening
parents:
diff changeset
1 @HD VN:1.0 SO:unsorted
28b31baf8315 planemo upload for repository https://github.com/joachimwolff/galaxytools/tree/hicup/tools/hicup commit b77cbc104261f8aa1524922f41c2a9a23052f5da
bgruening
parents:
diff changeset
2 @SQ SN:chr1 LN:199950
28b31baf8315 planemo upload for repository https://github.com/joachimwolff/galaxytools/tree/hicup/tools/hicup commit b77cbc104261f8aa1524922f41c2a9a23052f5da
bgruening
parents:
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3 @PG ID:bowtie2 PN:bowtie2 VN:2.3.0 CL:"/home/wolffj/miniconda2/envs/hicup/bin/bowtie2-align-s --wrapper basic-0 --very-sensitive -x genome -p 1 - --passthrough"
28b31baf8315 planemo upload for repository https://github.com/joachimwolff/galaxytools/tree/hicup/tools/hicup commit b77cbc104261f8aa1524922f41c2a9a23052f5da
bgruening
parents:
diff changeset
4 @PG ID:HiCUP Mapper VN:0.5.9
28b31baf8315 planemo upload for repository https://github.com/joachimwolff/galaxytools/tree/hicup/tools/hicup commit b77cbc104261f8aa1524922f41c2a9a23052f5da
bgruening
parents:
diff changeset
5 @PG ID:HiCUP Truncater VN:0.5.9 DS:"Restriction enzyme --re1 A^AGCTT"
28b31baf8315 planemo upload for repository https://github.com/joachimwolff/galaxytools/tree/hicup/tools/hicup commit b77cbc104261f8aa1524922f41c2a9a23052f5da
bgruening
parents:
diff changeset
6 @PG ID:HiCUP Filter VN:0.5.9 DS:"Max insert 0 Min insert 0 Digest file digest_file.txt"